UFO07072.5prime Sequence
1124 bp (1005 high quality bases) assembled on 2009-09-15
> UFO07072.5prime
CAGTCGACATGCCACTGACTGCGGAGAGTGCCGCCCAACAGATTCAGGAT
CGCCTGAAGGACATTCAACAAAACATTCACAATGTGGACGAGGAGCGTCG
TCGTGCGGAAAACTCCATTGCTAGTCTGGTGCGATCTCTGCACGCCACCA
ATCAGAAGGTTAAGCCCCTGCTCAAGGCCAGTTTAACGGAGGCTGCGCAG
GAGGAGGCCACAATCCGAGCCGCACTGGCGAAAATCCACGAGATTCGAAG
CATTCGCAATGAGAGGCGCATCCAAGCTCGCAACGCTGGAAATAAGGAGG
CCATTCGACGGGGCGCCCTTATGAAAATGGTGCAGCTCTCAGCGCAAACG
TTGCCGTTATTCGTTGGCAAACTAGGAGAACGAGCACCAGCTCTATGTGG
AGCCATTCCCGCCGAGGGGAACTATGTGGCCAAGGTTGGCGACAATGTTG
CCGCATTAGCTAAGGGAATTGATGAGGAGGAGAACTGGATCCTGGCGGAA
GTGGTGCAGTTCCTTCACCGTCAAAACAAATACGACGTAATTGACATTGA
CGAGGAGCAAAAGGATCGCCATGTGCTGAGCAAGCGAAAGGTCATCCCAC
TGCCTCTAATGCGTGCAAATCCTGAGACCGATGGTCACGCCCTCTTCCCC
AAGGACACAGTGGTAATGGCGCTATATCCACAGACCACCTGTTTCTACAA
GGCCATTGTCCATCGCCTGCCGCAAACCGCCACCGAGGATTACGAGGTGC
TATTCGAGGATTCATCGTACACGAATGGCTATGCCGAACCCTTGCCGGTC
GCACAGCGCTATGTGATTGCATATCGTCCAACGAAAAAGGGGGCTGGCAG
TGGCAGCGGGAATCTATCATCAGCAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATATCATATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGTCATGACTAGTGCTTGATTCCCCACC
ATAAAAAACGCCCGCGCACGAGCGTTCTGAACCAATCAGATGGAGTCTGA
GTCATTACTGGATCTATCACAGGAGTCAGGCGAGCCTCGATTCAATACGG
CCGCTGGCAACAATCGCCAGTACT
UFO07072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgf29-RB | 1150 | CG30390-RB | 204..1072 | 7..875 | 4345 | 100 | Plus |
| Sgf29-RA | 1027 | CG30390-RA | 81..949 | 7..875 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21292317..21292759 | 875..433 | 2215 | 100 | Minus |
| 2R | 25286936 | 2R | 21293037..21293268 | 276..45 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 21292825..21292986 | 436..275 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 21293320..21293361 | 48..7 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:42 has no hits.
UFO07072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:34 Download gff for
UFO07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30390-RA | 109..987 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:40 Download gff for
UFO07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgf29-RA | 74..952 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:55 Download gff for
UFO07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgf29-RA | 74..952 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:55 Download gff for
UFO07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21293037..21293265 | 48..276 | 100 | <- | Minus |
| 2R | 21293321..21293363 | 1..47 | 91 | | Minus |
| 2R | 21292313..21292757 | 435..879 | 99 | <- | Minus |
| 2R | 21292827..21292984 | 277..434 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:40 Download gff for
UFO07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17180542..17180770 | 48..276 | 100 | <- | Minus |
| arm_2R | 17180826..17180868 | 1..47 | 91 | | Minus |
| arm_2R | 17179818..17180262 | 435..879 | 99 | <- | Minus |
| arm_2R | 17180332..17180489 | 277..434 | 100 | <- | Minus |
