UFO07073.5prime Sequence
1110 bp (1000 high quality bases) assembled on 2009-09-15
> UFO07073.5prime
CAGTCGACATGTTGTGTTTTTACAGATCCAATATGAGTCTATCCTCGGTG
CCAAGCAGCATTCAGCATGGGAACAAGGTAACGCGCTGTGGCCTGAGCAT
CAACAATAAACTAGTGCAGGCCCTGATCCTCCTTTTGGCCTGCATTCTCT
TTGGTGCCAACATGAACTACGCCTCCTTTCCACCTGGCACTGTCATCGAT
ATCAAGCTGGGAGATGTCGCCCTCGAGCAGTTCAGCTATACGCCAACCCG
CGATGGATACGAGTTCAACTACACTCTTCCTGATGGAACTTTTCGTGATG
AGGTTGGCAAGGTCCTGAGTGGAACTTCAGCTGCCCAGGATCTGGAAAAT
GCCAACAACTTGGCCAAGAACCACCGTCCCTCGCGTCAACAGGGCCTTAA
GGTTCGCAAGTTGTCCGGAAAATCTCTTGCATCTCTGGCCGGAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGCCAGGTTT
CACCGTACACGCCACATCTGCGAATATATGTGTAGAACTGCGGAAATCGT
CGTGTATCACTCAGAGCGATGAACGTTCAGTTTGCTCATGAAACCGTGTA
CCAGGGTGAACACTATCGATATCACAGCTCACGTCCTTTCAATGGCATCG
ATCGATGACA
UFO07073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13297-RA | 595 | CG13297-RA | 30..465 | 8..443 | 2180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6157088..6157348 | 268..8 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 6156722..6156902 | 443..263 | 890 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:57 has no hits.
UFO07073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:25 Download gff for
UFO07073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13297-RA | 20..465 | 1..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:44 Download gff for
UFO07073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13297-RA | 24..469 | 1..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:48 Download gff for
UFO07073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13297-RA | 24..469 | 1..448 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:48 Download gff for
UFO07073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6157088..6157352 | 1..268 | 98 | | Minus |
| 3L | 6156722..6156896 | 269..443 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:44 Download gff for
UFO07073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6149822..6149996 | 269..443 | 100 | <- | Minus |
| arm_3L | 6150188..6150452 | 1..268 | 98 | | Minus |
