UFO07076.5prime Sequence
1094 bp (985 high quality bases) assembled on 2009-09-15
> UFO07076.5prime
CAGTCGACATGCTGCCTCTGCGCCGGAGTTTGCTCAAACCGCTCCAGGAT
GTACTCCGACATAGCCACCGCCAGATGTCGCAGAAGAACCTCTTGGAGCT
CACAGATCGAGGCTTTTTCCACGGCATATTTCCTGATACAGCGGCTCCCA
GGATGAAACAGCTTTTTACCAGAGGCCAACAGAGCATCTACGCAGGATTC
GATCCCACCGCTGACAGTCTACACGTGGGCAATCTGCTTGTAATAATGGG
CCTGATCCACTGCCAAAGAGCCGGCCACAGACCTATTGCCCTAGTAGGAG
GAGCAACTGGACTCATAGGGGATCCCAGTGGACGCAAGACAGAGCGCAAC
CAACTGGGCGAGACGGTGATCGAGACCAATCTAAAGGCTATCGAGCAACA
GCTTCGCCGGGTGTTCGAAAATCACGAGAACTGCCTTTGGGACTCTAAGA
AACAGAAATTGCCACTGGCTCCCCTAATAATCGTCAACAATGCCGACTGG
TATGCGGACCTGCAGCTCATCGACTTTGTGGCCAACATGGGACGACACTT
TCGCATGGGGTCAATGCTCTCCAGATCCTCGGTGCAGTCCCGCCTGGAGT
CGGAGGACGGAATGAGCTTCACCGAGTTCACCTACCAGATTTTCCAAGCC
TACGACTGGCTGCACCTACTGCGCCGCCACAACTGCTGCTTTCAAATGGG
AGGCTCCGATCAGACGGGCAATTTAATGACTGGACACGAGCTTATTAGCC
GCGTAGAGCGAAAGCGAGAGGTCTTCGGGCTCACCCTGCCATTGGTCACG
ACGGAAGAGGGCGATAAGTTCGGCAAGTCGGCAGGCAATGCAGTGTGCTA
GACGGTAACAAGACCTCGCCTTTCGCCCTCTACCAGTTTTCCTGCGCATG
CCAGACTCCGAGTCGAAAGCTCCTGAGCTGTTCACCTTCATCCCGCTGCC
CAGTGAGCAGTGATGCGGGAGCACACGAGAGCCCGAGAGCGTGCGCAGAC
TCTGCTGCTGAGACGTGACTCTGCTGTCATGAAAGTGGCTGAGCAGCGAC
GTGTGACATGCTTATACAGCAACTGAAGTAAGCGACCACTCCGA
UFO07076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-tyr-m-RA | 1540 | CG16912-RA | 72..1106 | 9..1026 | 4765 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24782363..24782840 | 951..479 | 2140 | 99 | Minus |
| 2R | 25286936 | 2R | 24782893..24783225 | 478..146 | 1665 | 100 | Minus |
| 2R | 25286936 | 2R | 24783293..24783429 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:27 has no hits.
UFO07076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:24 Download gff for
UFO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16912-RA | 63..1118 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:31 Download gff for
UFO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-m-RA | 68..1123 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:40 Download gff for
UFO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-m-RA | 68..1123 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:40 Download gff for
UFO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24782264..24782840 | 479..1036 | 96 | <- | Minus |
| 2R | 24782893..24783225 | 146..478 | 100 | <- | Minus |
| 2R | 24783293..24783433 | 1..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:31 Download gff for
UFO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20669787..20670363 | 479..1036 | 96 | <- | Minus |
| arm_2R | 20670416..20670748 | 146..478 | 100 | <- | Minus |
| arm_2R | 20670816..20670956 | 1..145 | 97 | | Minus |
