UFO07080.5prime Sequence
1082 bp (1006 high quality bases) assembled on 2009-09-15
> UFO07080.5prime
CAGTCGACATGAACTTCTACGACGAGGAGATCACAATCGGCGGACCCGAC
TCCAAGCACCTGAGCAGTGTTCAAATGGAGCCCCGAAATGGAGGAACAGG
CGGTGGCAGAGGTGGTGCTGGCGGTGGTGGACCAGGAGCAGTGGGCGGAG
AAGGAGCTGTACGAAGAGCAGCCGCAGGCAGGCACCGTCGAATGTTCCAA
AACAACTCTACTGATGACGATGGTCTGCTGCAGGACATCATTGATCACGA
TGACGAGGCGGAGGACAGCGAGGATGACGATGACAGCGAGATGCAGCTGC
CCCAGGGCATGACCATGGGCGTGGGAATGACGGGTCTGGTGCCCGGGCCG
AACATGCAAAAGCGGCCGGGAAGCAACCGAAGTTCCAAGCAAGTACCGGA
TGACACCCTGAGCTCGGGCAGCGAGGAGGCCGCAATGGGTGGCAGAATGG
GATCCGGAGGAGCAAGAGGCGGAGCCAAGCTACCACATCAAAAGCTAACG
CTTCCCATGAGGGGAAGTGCTAGTGGAGCAGGAAGATCTAAGCGGCAGGA
TGATCAATCCTTTATTATGAGTGCCGACAAATGGGAGGATCTGTCCGTGC
CCGGAGAACTCAAGGAACTCTTTCCCTACATCGTCAAATACACCCCGCAA
ACGATCGATACTCCGTTTCACCTGCAACCTTTCATCCCCGAGTTTGTGCC
CGCTGTGGGTGATGTGGATGCCCTTCTGAAAGTCCAGGCTCCGCCTCTTT
TGCAGCCCCAACGCCAGAAGGATCTGAACGATCACTTGGAGAAATTGGGC
TTATGGTTGCTCGATGAGCCCTCTGGCGCTCAAAGTGAGCCCAGTCTGCT
GAATATGAAACTTCGGTCGGTACTGAGGGCAGCATGGGGCGAAATCCGCG
TCACGCCTCCTCGCATCACTGGTTCCCACGCCCGATCGGGCAGGATATAG
AGAAGTGATCACTGAGTGACAGTGCATATGACTCAGTCATGTACGATGTC
AGCCAGAAGACAAGATGCCCTCTGGAGATGACGAAATCTTGCGATGAACA
ACCATAATGCTGGATCAGCTACGAATCTGTTC
UFO07080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15161-RA | 1643 | CG15161-RA | 287..1322 | 8..1027 | 4800 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18614742..18615509 | 957..194 | 3640 | 99.5 | Minus |
| 2L | 23513712 | 2L | 18615634..18615820 | 194..8 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:27 has no hits.
UFO07080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:22 Download gff for
UFO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15161-RA | 241..1260 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:15 Download gff for
UFO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15161-RA | 280..1299 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:33 Download gff for
UFO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15161-RA | 280..1299 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:33 Download gff for
UFO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18614705..18615508 | 195..989 | 98 | <- | Minus |
| 2L | 18615634..18615826 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:15 Download gff for
UFO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18614705..18615508 | 195..989 | 98 | <- | Minus |
| arm_2L | 18615634..18615826 | 1..194 | 97 | | Minus |
