UFO07084.5prime Sequence
1100 bp (1010 high quality bases) assembled on 2009-09-15
> UFO07084.5prime
CAGTCGACATGCTAGCGGTGAACCAGACGAAGAACACCCTACTCGATGGA
GCCTCCATTGAGGAAGAGCCGTACACAACTCCGCAGGAAAGCGAGGATTT
CTTTGAGAGTCTAGACAAACCGTCGAGGGAGCCAACACAACTGGCACCCA
GAAACACCTTCATCCGCGCCGGTGTGTTGACCACAGTGAGAGGTTCCGCC
TACATGGAGTATGGTAACACCAAGGTTCTGGCCATTGTGGCCCCGCCAAA
GGAGCTAATCCGCGCCAGCGCACGCAGAATGAACATGGGTGTTCTGAATT
GCTATGTGAATTTTGCGGCCTTCAGCACAGGGGATCTAGATTCGGTGCCG
GAACGGGAACGCCACCTGAGCAGCATGCTGACCAAGGCCATGGAGCCGGT
GGTGTGCCGCACGGAGTTCCTTAACTTTCAGCTGGACATACGGGTGCTTA
TTCTCGACGATGACGGCTGCCTGCTCAGCACTGCCATCAATTGCTGCGGA
GTCGCTTTGGTGGAGTGCGGCATTTCCACTTACGACTTAATTACGGCCTC
CACAGCTTGTATCTATCGGGATCACGTCTTCCTGAATCCCAGTGCCAAGG
TTGAGGAGCTGCTCTGGAAGCATCGCAACAGCAGCACCGATAGCACAACC
AGCCCATCATCCGCCCAGGAGCACGGCCTGATCATTACCGCCAGCATGGA
TACCTTTGAACAGATCGCCCAGTGCCAGCAGTGCGGATATCTCAGTCCAG
CCACCTATGTAAAGCTGCTGGATTACACCCTGACCATTAACAAGTCCCTG
AGAGAACTAGTCAAAGGCGTGCTCACGAAGCGGGTGAAGGAGCAGCACGA
ACTAGATCTACGCGAGAAGCCGAGACCGCTCTAGAAGATCAGCGTTTGGA
GGAAATATCGAGAAGCTAAAGAGCAGGACCAGAGGAGTTATACATCGACA
TCGGAGATCCTATGTAAAGAGCAGCAGCTTTCTAGACATCGTTTGGCCGC
GGCCAGTAGTGTTCATATCATATCTTATCATATCAATCCACTAGCTAGAA
TCTGGTCATGACTATGCCTGATTCCCACATAAAGTCTGGCGCAACGTGTG
UFO07084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtr3-RA | 1253 | CG8025-RA | 87..1060 | 9..971 | 4590 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19912656..19913420 | 922..160 | 3710 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19913479..19913629 | 159..9 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:59 has no hits.
UFO07084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:46 Download gff for
UFO07084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtr3-RA | 87..1069 | 9..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:49 Download gff for
UFO07084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtr3-RA | 87..1069 | 9..980 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:49 Download gff for
UFO07084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19912598..19913420 | 160..971 | 98 | <- | Minus |
| 3L | 19913479..19913629 | 9..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:46 Download gff for
UFO07084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19905698..19906520 | 160..971 | 98 | <- | Minus |
| arm_3L | 19906579..19906729 | 9..159 | 100 | | Minus |
