UFO07085.5prime Sequence
1098 bp (990 high quality bases) assembled on 2009-09-15
> UFO07085.5prime
CAGTCGACATGGCTGTCATCATCAGCTGCCTATTACTTCTCCTCGCGACA
GTGTCGCAGTCCAAGACCGTGGGTTACGATGCGGCTGCCGATCGCAATTT
GCTGGCTGCCGATCTCTACAACGCCGTGGCCGCCGATCATCTGAACGAAA
ATGTGGTCATCTCGCCAGCGACCATACAGAGTTCCATGGCGCTGGCCTTC
GTGGGGGCCAAGGGTCAGACGGCATCGGAGTTGCAGCAGGGGCTGCGTTT
AGGTCCTGGCGATGCGGATGCGGTGAGCCAGCGCAGCGGTAGTTACCAAC
AGGCCCTGACCCGCGACAACAACTTCCGGCTGGCCAACAACATTTACATC
AACGAGAACCTTGAGTTCAAGGGCTCCTTCAGGGACGTGGCCCAGCGCCA
GTTCGACTCGAACATCGACAAGCTGGACTTTCACCCGCCGTACAACAAGC
GCACGGCGGATGGCATCAACCGGGCGGTGGCCACCAAGACCAACGGCAAG
ATCACTGACATCCTCCGCGCCGAGCTGCTGAATGATCGCACCGAGGGAGT
GATCGTGAACGGCGTTTCCTACTCAGCCGCCTGGCAAAAGGCCTTCCGGC
TGGACAAGACCGAAAAGCGCTCCTTCCGCACCGGAAGCGGGCAGTCTGTC
AAGGTAGACACCATGTGGACGCTGCAGAACTTCAACTACGCCGAGGTCAA
CTCCCTGGACGCCAAGGTGGTGGAGCTGCCCTACCAGAACCCCGACTTCT
CCATGCTGCTGCTCCTGCCCAATCGCAAGGATGGTCTGAGATCCCTGCAG
CAGTCGCTGTCCGGTAAGAATCTTCTGGCCGAAATCGGAGCGATGAGCCA
GCAAAAAGTGGAGGTGCTGCTGCCCAAGTTTAGTGTCACCTTTGGCTTGG
TTTGGGAGGGACCATTCAGAGCTGGGCGTCCATACAATGTCTCGAGAGAT
GGTGACTTTGGCACATGTACGCATGTTTGTCAGCATTCATACGCAGTGAG
CAAAGCATGTGAGTCACTGAGCTGGGCTGGATCACCCTGAACTGAATGCT
ACGACTCTTTCCGGCTCAGAGGTCAGGCGTCATCGTTCGGTTCGCATC
UFO07085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ab-RB | 1329 | CG1865-RB | 78..1059 | 8..984 | 4740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7152263..7153148 | 918..33 | 4370 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7151998..7152065 | 984..920 | 190 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:36 has no hits.
UFO07085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:19 Download gff for
UFO07085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 48..1060 | 1..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:50 Download gff for
UFO07085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 70..1082 | 1..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:30 Download gff for
UFO07085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 70..1082 | 1..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:30 Download gff for
UFO07085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7151975..7152063 | 922..1002 | 91 | <- | Minus |
| 2R | 7152258..7153144 | 37..921 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:50 Download gff for
UFO07085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3039480..3039568 | 922..1002 | 91 | <- | Minus |
| arm_2R | 3039763..3040649 | 37..921 | 99 | <- | Minus |
