UFO07087.5prime Sequence
1093 bp (1004 high quality bases) assembled on 2009-09-15
> UFO07087.5prime
CAGTCGACATGAGAAAATTCTGTTTGCTTCTTTTAATGGCGCATTTTGTG
GCCTCAAGCCGAAATTTAAACGATATTCTCGGTCGCGAGGAGTGGATTAG
CATAGCCAAGGAATACATCAAGAACCACAAGCCTTACAAAGCCAAAATCT
ACACACCCTACAAGCCGCGCATCGTAAATTTTACCAATCCGTTCGATGGA
GATTTTTGGGACACAACTACGGTGGCCACCAATCCGCAGGAGACTACTGG
CTACTTCACTGGGGAAGTATCTACTACAACGGAGAAAAGTGCCACTGAGG
AATCTACAACTACGGCGGTGGATTATTCAACCACCGAATCTAGTTATGTA
ACTTCAACCACGGATACTTTATATTCCACGACAACAGCTTGGCCGGAAGT
CACCAGCACAGATGCTATAGATGCCACTGAATCAGTAGCCCTATATTCCA
CAACAACTTCGAGTCCAGAAGCTGCAGATTCAACGACAGAAAGCAATTCA
GACAGTACTGAATATGCTGAATCAACGTTAATTTATCCAGATTTATCTAC
AGGATGGCAAGAAACTACTACAGAAACCATTCAGAGCTCTACAGGATTGC
AGGAATCAACAACAACAGAGTTTATGCCAAGTACTACGGAATTTCCGGAA
TCAACGACTACTTTAAGTTCTGAATTTTCAGAGAAAGAACTAATAAAAAC
TACCACAGAAATAGAAATCAATCCAAGCACTACAGAATTGCCGGAATCAA
CGACTGAATCTGCTGATTCTACCACAGAACCGAACGAATCCACGTTTGCA
TTATCCACAGATCAAACTACAACTGAACAGCAGAACTTCAACAGAAGAGT
TGTTTTCAACCACAGAAACCAGGAATCTACTACATCCTTGCTGGAAATCA
TTGCCACGACTCCAGGCGTGGAAACTACCACGTCGTATCTGGGATGCAGT
GATGACAGCACCGAAGAGGAAAGTTCTACATATCACACATTTGGATTTAA
TTTACACAACGTAATAGTTGACTCAGTAGAACCACACACCAAGCCATGAA
TCGTCGAGATACGTCGCAGAACGAAAATGAGTACTCTCGGACG
UFO07087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31253-RA | 1228 | CG31253-RA | 40..1088 | 9..1043 | 4800 | 98.1 | Plus |
| CG31131-RB | 1228 | CG31131-RB | 40..1088 | 9..1043 | 4800 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27959559..27960534 | 981..9 | 4605 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27962205..27963180 | 981..9 | 4605 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:54 has no hits.
UFO07087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:17 Download gff for
UFO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31253-RA | 29..1057 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:42 Download gff for
UFO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31131-RB | 33..1061 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:46 Download gff for
UFO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31131-RB | 33..1061 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:46 Download gff for
UFO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27959513..27960538 | 1..1021 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:42 Download gff for
UFO07087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23785235..23786260 | 1..1021 | 98 | | Minus |
