UFO07091.5prime Sequence
1075 bp (978 high quality bases) assembled on 2009-09-15
> UFO07091.5prime
CAGTCGACATGAAGACATTCCTGATTTTGGCATTCTTTGCTCTGGCCGCC
TCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCTG
GTACGTTCCCCAGGAGGATGGCACTTCCGAGTGGGTGGACATGGACGTTG
CCGAACAGTGGATGGAAGCCCAAGAGTTGCTGGAAAGTCGTGGCTTGACC
ACCGTTCCCGTAAAGTTCTACCTTTACACCTCCTCCAACCCCACCAAGGG
CAAGAAGATCACCGCCTCCACCAAGTCCATTGATGCCTCCAGCTTTAACT
CCGCCCATCCAACTCGCTTTGTGATCCACGGCTGGACCCAGAGCTACACC
GCCAGCATGAACAAGGACATCCGCAGTGCCTGGCTCTCCAGAGGAGACTA
CAACGTGATCGTCGTCGACTGGGCCCGTGCTCGTTCCGTGGATTACGCGA
CTTCTGTTTTGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCAAGATGATC
AACTTCCTGAAGGACAACCACGGTCTGAATTTGAACGATTTGTACGTGAT
TGGTCACAGCCTGGGCGCCCATGTGGCTGGATATGCCGGCAAGAACACCG
ACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTCTTC
AGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCCTGGTATGT
GGAGTCCATCCAGACCAATGGTGGCACTCTGGGATTCCTGAAGCCCATCG
GCAAGGGAGCTTTCTACCCCAACGGAGGAAAGACCCAGCCCGGATGCGGA
TTGGACCTGACTGGCGCCTGCTCCCACGGACGCTCTACAACCTACTACGC
CGAGGCCGTCTCCGAGGACACTTCGGACCATGAAGTGCGGAGACTACGAG
AGCCGTTTCAGATGCGAGCACTACTCAGCGTCGCATGGAGCTGATACATG
CTACATGGTCGAGGTGACTACTATGTGCCCGTAAACAGCAGCTCCTCGCA
TGATACGCAGCCTTCTAGAACATCGTGCGCCGGCAGTTATTGTCTTATCT
ATCTAATCTATCTAATCCAACAGCT
UFO07091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1085 | CG6277-RA | 31..1030 | 9..990 | 4600 | 98.2 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 22..1021 | 9..990 | 2850 | 86.6 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 323..1018 | 315..989 | 1060 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27022232..27023086 | 900..48 | 4175 | 99.8 | Minus |
| 3R | 32079331 | 3R | 27025125..27025960 | 900..67 | 2565 | 87.7 | Minus |
| 3R | 32079331 | 3R | 27020440..27020998 | 870..315 | 945 | 78.4 | Minus |
| 3R | 32079331 | 3R | 27006112..27006583 | 870..402 | 810 | 78.6 | Minus |
| 3R | 32079331 | 3R | 27017499..27017623 | 748..624 | 265 | 80.8 | Minus |
| 3R | 32079331 | 3R | 27018826..27019142 | 868..555 | 200 | 71.6 | Minus |
| 3R | 32079331 | 3R | 27023148..27023187 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:41 has no hits.
UFO07091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:14 Download gff for
UFO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 22..919 | 5..900 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:50 Download gff for
UFO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 27..924 | 5..900 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:51 Download gff for
UFO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 27..924 | 5..900 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:51 Download gff for
UFO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27022232..27023085 | 49..900 | 99 | <- | Minus |
| 3R | 27023148..27023191 | 5..48 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:50 Download gff for
UFO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22847954..22848807 | 49..900 | 99 | <- | Minus |
| arm_3R | 22848870..22848913 | 5..48 | 95 | | Minus |
