UFO07096.5prime Sequence
1066 bp (973 high quality bases) assembled on 2009-09-15
> UFO07096.5prime
CAGTCGACATGAAGCCGTTGATAGTGGTCGTGCTCGTGGGCCTGATGGCA
AGTGGCTGCCACATTGTTCACTCCCAGGAGCCTGGCGATGCTGTGGAGCA
GGAAGCCAGCGAGTCGGATGACGCACTTAAGATCAAAGAGAGTCAGGCCA
GCATAGCCGCCCAGGTGGAGGCCATGCTCGTGCACTTTCAGCAGGAGGAT
CCGCAGGGTCTGCCCGGCGTGCCCGTGCCCGATCCGTTGGAGGTGCCCAA
TGTGAAGAAGAGCATGGGCATGGCCAATCTGGACATGAAGCAGGTCAAGG
CGTATGGCTTGTCCAAGTTCCGCATTGATAAAATGAACCTAGACCTGAAG
GAAATGAGATTCAACGGTGGCCTCCAGCTGGACCAGATGCTGGTCAAGGG
CCAGTACACCCTCAGTTCATTCTTTTCGAAAGCCAATGGACCCTTTACAG
TAGTCCTGAAGAATGTCTATGCCGAGGCAACCGCCTTCTTGGCCGTCGAA
CGAGACGGTCAGCTGGCCACGGACCGCATCAAGATCGACATCACATTCTC
GGACATGACAATGGACTTCCAGAACCTCGGCCTGGTGGGCAGTGTCTTTC
AGAGCGTGGTGAACGGTGCGCCCAACTTGGTCTTCGACGCCATGAAGCCA
TTTATGCTCCAGGAGGCGGACAAAAAGCTGCGCAGCGAGATCAACGTAAT
GATCCAGAAAACCTTGGGCGAACGCCGACTGCCCAATTCCATAACGCCGC
TGGACAGCGCCATTGCCATGGCACGCAAGATGGTTCGGCAGAAGGGCTTC
GATCCGTACCACCTGCCTGATGTCAATCGCACCATGGGCGTGTTCAGTGT
CCAGTTAGCACACACCTGGATCAATGGAATCTCTAGCTTCTACCGCGTGG
GCAACATAACCGCTGGCATGGCCAACAAAACGGTGTCGGTCGTTCTGCAA
ATAGCACCAGCAGTGACGGGAGCGCCAGTGCAGTGATGTACATGATGACA
CGCGTCGTCACGTACATTTACGATCAGCACATACGCGCCACCGTGACTTG
AATCATCCTTGACCAC
UFO07096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3246-RA | 1511 | CG3246-RA | 102..1150 | 9..1044 | 4880 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3460786..3461380 | 954..360 | 2975 | 100 | Minus |
| 2L | 23513712 | 2L | 3461438..3461707 | 359..90 | 1350 | 100 | Minus |
| 2L | 23513712 | 2L | 3461770..3461851 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:08 has no hits.
UFO07096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:20 Download gff for
UFO07096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 125..1185 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:14 Download gff for
UFO07096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 102..1162 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:55 Download gff for
UFO07096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 102..1162 | 9..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:55 Download gff for
UFO07096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3460671..3461380 | 360..1055 | 96 | <- | Minus |
| 2L | 3461438..3461706 | 91..359 | 100 | <- | Minus |
| 2L | 3461770..3461851 | 9..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:14 Download gff for
UFO07096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3460671..3461380 | 360..1055 | 96 | <- | Minus |
| arm_2L | 3461438..3461706 | 91..359 | 100 | <- | Minus |
| arm_2L | 3461770..3461851 | 9..90 | 100 | | Minus |
