UFO07109.5prime Sequence
1132 bp (1024 high quality bases) assembled on 2009-09-30
> UFO07109.5prime
CAGTCGACATGTCGAAACTCATCCGTTGGGGAATCGCTTCCGCCGGCAAG
ATCAGCGAGGACTTTGTCATCGCCCTCAGCACCCTGCCCTCCAGCGACCA
CAAGGTCCAGGCTGTAGCCGCCCGAGCTCTTGATCGCGCCCAGGAGTTCG
CCACCAAGCACGGCATTCCCAAGGCCCTCGGAAGCTACGAGGAGCTGGCC
AAGAGCACCGATGTCGATGTGGTCTACATTGGCACCCTGAATCCCCAGCA
CTACGAGGTCGCCTTGCTGATGCTGAACAATGGCAAGCATGTTCTCTGCG
AGAAGCCGTTGGCCATGAACAAGAAGCAGGTGGAGGGCATCCTGGCCGCT
GCCAAGGCCAACAAGCGCTTCTTCATGGAGGCCGTGTGGTCGCGATTCTT
CCCCTCGTACCAGCGCGTTAAGGAGCTCATCTCCAGCGGACAGCTGGGCC
AAGTCAAGGATGTGGAGGTCAACTTTGGCTTCCCTATGCCTCATGTCGAC
CGCTTGCAGAAACGCGAACTGGGAGGCGGTGTGGTCTACGATCTGGGCAT
TTACACCATCCAGGTCTCGCAGTGGGCCTTCCAGGAGAAACCGGAGAAGA
TCGAGTCCAAGGGAACCCTGAACGCCGAGGGCATCGACGATGATGTTAGT
GCCACCTTGACCTACAGTGGTGGGCGCACTGCTCGCATGCGCTTCTCCTC
CAAGGAGAAGTTGGGAAACACCGCCGTTATCAAGGGCACCAAAGGACAAG
TTACCCTGATTGACTTCTGGTCGCCCAACAAGCTCATCGACATCGATGGC
CAGGAGAAAGGAGTGGCTGCCTCCCAAGGCAAGTACGCGACCAACTACGC
CAACTCCGAGGCCATGCGCTATGAGGCGGAGGCAGTGCGCCAGTCCATCA
TCGCCGGCGAGTGAGACAGACGTCACCTACGCCGACAGTTTGATCTTCGC
GAGATCGAGGACACCATCGCAGCAGATCGTGTGCTGACAGTACGATGAGC
AGCAGCTTTCTAGACATTCGTTTGGCGCGGCGGCCCAGTAGTGTCATAAT
CATAATCATATCATATTCTTATCACACTAGCTTAGGAAATTCTGTCATGA
CTATGCTGGAATCTCCACAAAAAAACGCCGGC
UFO07109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1210 | CG3609-RC | 146..1152 | 7..1002 | 4715 | 98.7 | Plus |
| CG3609-RB | 1099 | CG3609-RB | 35..1041 | 7..1002 | 4715 | 98.7 | Plus |
| CG3609-RA | 1223 | CG3609-RA | 159..1165 | 7..1002 | 4715 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2373133..2373426 | 509..216 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 2372830..2373076 | 755..509 | 1235 | 100 | Minus |
| 2L | 23513712 | 2L | 2373494..2373703 | 216..7 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 2372552..2372770 | 968..756 | 750 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:09 has no hits.
UFO07109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:10 Download gff for
UFO07109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 38..1052 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:47 Download gff for
UFO07109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 154..1165 | 1..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:09 Download gff for
UFO07109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 154..1165 | 1..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:09 Download gff for
UFO07109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2372513..2372770 | 756..1002 | 94 | <- | Minus |
| 2L | 2372830..2373076 | 509..755 | 100 | <- | Minus |
| 2L | 2373134..2373425 | 217..508 | 100 | <- | Minus |
| 2L | 2373494..2373708 | 1..216 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:47 Download gff for
UFO07109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2372830..2373076 | 509..755 | 100 | <- | Minus |
| arm_2L | 2373134..2373425 | 217..508 | 100 | <- | Minus |
| arm_2L | 2373494..2373708 | 1..216 | 99 | | Minus |
| arm_2L | 2372513..2372770 | 756..1002 | 94 | <- | Minus |
