UFO07111.5prime Sequence
1097 bp (1002 high quality bases) assembled on 2009-09-30
> UFO07111.5prime
CAGTCGACATGAGCAAGGACATTTACTACTCCGACAAGTACTACGATGAG
CAGTTCGAGTACAGACATGTGGTTTTGCCAAAAGAGCTGGTAAAAATGGT
GCCCAAGACTCATCTGATGACGGAGGCCGAGTGGCGATCAATTGGCGTAC
AGCAGTCGCGCGGATGGATCCACTACATGATCCATAAGCCGGAGCCCCAC
ATCCTCCTGTTTCGGCGACCCAAAACGGATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTA
TTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGT
AACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCC
ATACGAATTCCAGATGAGCATTCATCAGCGGGCAGATGTGAATAAGGCCG
GATAAACTTGTGCTATTTTCTTTACGTCTTTAAAAGCCGTATATCAGCTG
ACGTCTGCTATAGTACATGGAGCAACTGACTGAAATGCTCAAATGTTCTT
ACGATGCATGGATTTCCACGTGCAATCATGATTTTTCCATTTAGCTT
UFO07111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks30A-RA | 1147 | CG3738-RA | 293..514 | 9..230 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9331179..9331348 | 61..230 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 9331055..9331110 | 9..64 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 799..866 | 123 | 68.1 | Plus |
UFO07111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:16 Download gff for
UFO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks30A-RA | 281..510 | 1..230 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:50 Download gff for
UFO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks30A-RA | 285..514 | 1..230 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:12 Download gff for
UFO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks30A-RA | 285..514 | 1..230 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:12 Download gff for
UFO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9331047..9331110 | 1..64 | 95 | -> | Plus |
| 2L | 9331183..9331348 | 65..230 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:50 Download gff for
UFO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9331047..9331110 | 1..64 | 95 | -> | Plus |
| arm_2L | 9331183..9331348 | 65..230 | 100 | == | Plus |
