UFO07112.5prime Sequence
1105 bp (981 high quality bases) assembled on 2009-09-30
> UFO07112.5prime
CAGTCGACATGTCAGCATTTGAACTGAAAAATTTAAATGATTGCTTGGAA
AAGCATTTACCACCCGATGAACTAAAGGAGGTTAAGAGAATTTTGTACGG
CGTAGAAGAAGATCAAACGCTTGAGCTGCCCACAAGTGCGAAAGATATTG
CCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACGGCGCGAGAG
GAGCAAACTCGCAAGCGCCGGATAGTCAGAGTTGGCGCCATCCAAAACTC
TATCGTAATCCCTACTACGGCGCCCATTGAAAAACAACGAGAGGCCATCT
GGAACAAAGTGAAGACTATGATCAAGGCGGCAGCGGAAGCCGGATGCAAC
ATTGTTTGCACCCAAGAAGCGTGGACCATGCCCTTTGCCTTCTGCACTCG
CGAGAAGTTTCCTTGGTGTGAGTTTGCCGAAGAAGCCGAAAACGGTCCCA
CAACCAAGATGCTCGCAGAGCTGGCCAAGGCTTACAACATGGTTATCATC
CACTCGATTCTGGAGCGAGATATGGAGCATGGCGAGACCATTTGGAATAC
GGCAGTGGTCATCTCGAACAGTGGTCGCTACCTGGGCAAGCACCGCAAGA
ACCACATTCCCCGGGTGGGTGACTTCAATGAGTCCACCTACTACATGGAG
GGGAACACCGGTCATCCGGTTTTCGAGACGGAGTTCGGCAAGCTGGCTGT
GAACATATGCTACGGGCGCCATCACCCACAGAACTGGATGATGTTCGGTC
TGAATGGAGCCGAGATTGTCTTTAATCCCTCGGCTACGATCGGCCGCCTA
TCGGAGCCATTGTGGAGCATTGAGGCACGTAACGCTGCCATCGCCAATAG
CTACTTTACGGGTTCCGATTAATCGCGTGAGAACGAGCAGTTCCCGAACG
AATACACATCTGGTGATGGCAACAAGCGCAATAAGGAGTTTGGTCCCCTT
CTACGGATCTCTATGTCGCAGCTCTGACGCTCAGGACACGAGCTATCGCG
GGACAAAGACGCTGCTTGTCGTGACTCGATCTGAACTGTGTCGCAGGGAG
ACTTCTGGGCTCGCATGACCAAGTCGCTGTATGCGATCTCAAAAGCAATT
CGAAC
UFO07112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd3-RA | 1361 | CG3027-RA | 94..1159 | 9..1059 | 4815 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7748290..7748873 | 960..376 | 2705 | 98.6 | Minus |
| 3R | 32079331 | 3R | 7748950..7749212 | 375..113 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 7749883..7749986 | 112..9 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:30 has no hits.
UFO07112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:16 Download gff for
UFO07112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 91..1156 | 9..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:58 Download gff for
UFO07112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1159 | 9..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:13 Download gff for
UFO07112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1159 | 9..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:13 Download gff for
UFO07112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7749883..7749986 | 9..112 | 100 | | Minus |
| 3R | 7748254..7748873 | 376..990 | 98 | <- | Minus |
| 3R | 7748950..7749212 | 113..375 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:58 Download gff for
UFO07112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3573976..3574595 | 376..990 | 98 | <- | Minus |
| arm_3R | 3574672..3574934 | 113..375 | 100 | <- | Minus |
| arm_3R | 3575605..3575708 | 9..112 | 100 | | Minus |
