UFO07116.5prime Sequence
1139 bp (1031 high quality bases) assembled on 2009-09-30
> UFO07116.5prime
CAGTCGACATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCG
ATATTTTTAGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTA
TGATAATGCCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCG
TTCTCAGCTGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGG
AAAAAGAACGGCACCGCTGTGACGGATGTACCTTCTCTCAGAGGTCGCTT
TAAGTTAATCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGA
ACGACGATGGCAAATACAGTTGCGAGTTTGACGGCGTGTCCAAGGAAATC
GAAGTAATTGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGT
GGAGGGTGAAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAAACCAG
AGTTGACATGGACCTTTGCCAATGTAACGCTGACAAATGCCACAGATCGC
TTCATTCTCAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACT
GGATAATGTGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAA
ATGCGGCCAATGTCTACGGTGGGAACACCACCACTCCTGCCAGCGACGTC
ACAACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGG
CATCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGA
AGCGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAA
CAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGATC
TATCACAGGAGTCAGCGAGCTCGATTATCAAATTACGCCCCGCCCTGCAC
TCATCGCAGTACTGTTGTATTCATTAAGCAATTCTGCGAACTGCAGCCAT
CCAAACGCATGATGACCTGATTCGCACGGCATCAGAACC
UFO07116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg-RB | 2744 | CG31605-RB | 373..1167 | 9..803 | 3975 | 100 | Plus |
| Bsg-RH | 3001 | CG31605-RH | 630..1424 | 9..803 | 3975 | 100 | Plus |
| Bsg-RF | 10170 | CG31605-RF | 726..1520 | 9..803 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8107237..8107448 | 468..679 | 1030 | 99.1 | Plus |
| 2L | 23513712 | 2L | 8106839..8107000 | 199..360 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 8107747..8107881 | 669..803 | 675 | 100 | Plus |
| 2L | 23513712 | 2L | 8105691..8105810 | 81..200 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 8107065..8107173 | 360..468 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 8089664..8089736 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:33 has no hits.
UFO07116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:06 Download gff for
UFO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RC | 695..1500 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:12 Download gff for
UFO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RF | 726..1531 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:52 Download gff for
UFO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RF | 726..1531 | 9..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:52 Download gff for
UFO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8089664..8089736 | 9..81 | 100 | -> | Plus |
| 2L | 8105692..8105809 | 82..199 | 100 | -> | Plus |
| 2L | 8106840..8107000 | 200..360 | 100 | -> | Plus |
| 2L | 8107066..8107173 | 361..468 | 100 | -> | Plus |
| 2L | 8107238..8107438 | 469..669 | 100 | -> | Plus |
| 2L | 8107748..8107892 | 670..815 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:12 Download gff for
UFO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8089664..8089736 | 9..81 | 100 | -> | Plus |
| arm_2L | 8105692..8105809 | 82..199 | 100 | -> | Plus |
| arm_2L | 8106840..8107000 | 200..360 | 100 | -> | Plus |
| arm_2L | 8107066..8107173 | 361..468 | 100 | -> | Plus |
| arm_2L | 8107238..8107438 | 469..669 | 100 | -> | Plus |
| arm_2L | 8107748..8107892 | 670..815 | 96 | == | Plus |
