UFO07117.5prime Sequence
1115 bp (1009 high quality bases) assembled on 2009-09-30
> UFO07117.5prime
CAGTCGACATGGCGCCGACCACGACGATTGAGACCATCACAATCACGAGG
CCGCTGAAGGTGATTGCATTTATCTGCGGCGTCATCGTGGTGGCCCTCAT
GATTATGGCTCTGGCGTCCACAGATTGGTTAATGGCCTCAGACTGGCGGC
AAGGTCTCTTTGTGCACTGCATCGAGGATGATTCGGTGCCGCCGCTGCCA
TTCAATATCCAGGATCCGCCAGGATGCTACTGGACCCGCGATGTCGGCTA
CATTAAGGCCACAGCCGCTCTGTGCATCATCACGCTGATAACGGACGTCA
TTGCCACAGTACTGACAGGTCTGGGCCTCCGGACGCAGAATCATAATCTA
AAGTATAAGTTCTATCGTATAGCAGTATTGGTGATGCTTGTATCCTTGCT
GGCCGTATTGTCCGCCTTGATCGTATATCCAGTATGCTTTGCCGGCGAAC
TAACCATGGCCAATCGACGAGTCTGGGAATTTGGCTGGGCCTATGGCGTC
GGCTGGGGTGCGGCCATCTTTCTATTTGGGGCCGTTGTCCTGCTGCTCTG
CGACAAGGAGTCGGAGGAGATCTACTATAAGGAAAGGAAAATCGTACATG
AAAACCAAATGCGCGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGAAGCCATCACAAACGGCATGATGACCTGATCGCAGC
GCATCAGCACTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGCGAG
AGTGTCATATGCCACGGTTATCAAACTGTGAACTCACCAGGATGGCTGAA
CGAAACTATCTCATAACCTTTAAGATGCAGTTACGTAACGCCATCTGCAA
TATGTAACTGCGAAT
UFO07117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45049-RF | 1516 | CG45049-RF | 136..744 | 9..617 | 3045 | 100 | Plus |
| CG45049-RE | 3417 | CG45049-RE | 551..1159 | 9..617 | 3045 | 100 | Plus |
| CG45049-RC | 3708 | CG45049-RC | 842..1450 | 9..617 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22729351..22729540 | 58..247 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 22729946..22730104 | 459..617 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 22729609..22729759 | 246..396 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 22729817..22729879 | 397..459 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 22729234..22729286 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:49 has no hits.
UFO07117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:04 Download gff for
UFO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17618-RB | 812..1430 | 2..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:42 Download gff for
UFO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17618-RC | 837..1455 | 2..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:45 Download gff for
UFO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45049-RC | 837..1455 | 2..623 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:45 Download gff for
UFO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22729229..22729284 | 2..59 | 93 | -> | Plus |
| 3R | 22729353..22729539 | 60..246 | 100 | -> | Plus |
| 3R | 22729610..22729759 | 247..396 | 100 | -> | Plus |
| 3R | 22729817..22729879 | 397..459 | 100 | -> | Plus |
| 3R | 22729947..22730109 | 460..623 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:42 Download gff for
UFO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18554951..18555006 | 2..59 | 93 | -> | Plus |
| arm_3R | 18555075..18555261 | 60..246 | 100 | -> | Plus |
| arm_3R | 18555332..18555481 | 247..396 | 100 | -> | Plus |
| arm_3R | 18555539..18555601 | 397..459 | 100 | -> | Plus |
| arm_3R | 18555669..18555831 | 460..623 | 98 | == | Plus |
