UFO07119.5prime Sequence
1155 bp (1032 high quality bases) assembled on 2009-09-30
> UFO07119.5prime
CAGTCGACATGCCCGAGTACATGTTGTGCCGAATCTGCTTGACAGAGGAC
ATCAACTCGGAGGCGATGGCGCCCCTGTTCGATGACAACGACGCCCAGTG
CCGGGAGCTGGTGCGCAAGATTGAAGAAGTGGGCAGCATAAAGCTGGTGC
CGCTGCAGAACATCCCCAGTATGTTGTGCTACAGCTGCGTGGAGCGACTG
ACCAGTGCCCACAAGTTCCGGGAGCTTTGCCAGGAGAGCGAGCGCACATT
TGCCACCAATGTAGTCAAGGCCGAGATGAAGTCGGAGCCAACGGACGAGG
TGCCGCACGTAGTGGCTGACAACATTGAGTACATCTACGAATCGGCCAAC
GACTTCATCGACGGTGTCGAGGATGACATCGGAATGGAGAACATCATGGA
GGAGCCCCTGGAGGATGGTGTCGGGGAAACGTCGCAGGCCTACGAGACTA
GCACTGTAGTGGACGACCTGGACGAGGATGACTTGCTGGTGCCGAATAGC
ACCGATAGCGACTACCAGCCCATCGAGCGCTGCCGCAAAGCTAAGGTGCG
TAAAACGCGGATGACTAAACGTGGACGTGGCCGACCTCGCGGTGCTAGCT
CCGGACACCCACGCAGTTTTAGCGAGGAGCGTCCGCCTGTTCAAGCTAGC
TTCAAATCATCTCCCGAAGTATCCTCCACGAACATTATGTGCGAAATCTG
CGGCAATATCTACTCCAAGCGAGCCGCTCTCAACATTCATATGCGTCGTC
ATATGGCCGAGAAACCATTTAAATGCGAAATATGCAGCAAATCCTTCGCG
GGTCCATCCGAGCTAAATCGCCATATCCGCGTTCACACGGGCGAGAAACC
ATTCTTGTGTAAATATTGCAACCGCTCGTTTGCGGATCGCAGCTCCAATA
TTCGTCATGAAAGACACACACAAACGAGCGACCTTTCACTTGCTCACATG
CGCAGGCATTCTCCTACTCTAACGTGCTAAAAACATATGCTCACCCACAC
GGGCGAGAGCCTTTTCTCTGTCGAGTCTGCATAGACTTTTCCCGCAGCAC
AGTGATCAGCATTGGCACATGACCCAACACCGACTGTATACACCACAAAC
GACGGGACGGGGGCCTATGCCAGCCTTCTGGACACATTCGTTTGGGCGCG
CGGGC
UFO07119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14711-RA | 1319 | CG14711-RA | 73..1197 | 9..1112 | 5080 | 97.8 | Plus |
| CG6808-RA | 3138 | CG6808-RA | 508..1163 | 913..268 | 3120 | 98.5 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1402..1536 | 143..9 | 675 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1220..1348 | 270..142 | 645 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 339..448 | 1017..914 | 410 | 94.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11623784..11624294 | 268..778 | 2555 | 100 | Plus |
| 3R | 32079331 | 3R | 11623411..11623545 | 9..143 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11624357..11624491 | 779..913 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11623599..11623727 | 142..270 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 11624551..11624650 | 914..1008 | 305 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:07 has no hits.
UFO07119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:03 Download gff for
UFO07119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 38..1067 | 9..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:35 Download gff for
UFO07119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1102 | 9..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:54 Download gff for
UFO07119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1102 | 9..1031 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:54 Download gff for
UFO07119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11623411..11623545 | 9..143 | 100 | -> | Plus |
| 3R | 11623601..11623726 | 144..269 | 100 | -> | Plus |
| 3R | 11623786..11624294 | 270..778 | 100 | -> | Plus |
| 3R | 11624357..11624491 | 779..913 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:35 Download gff for
UFO07119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7449133..7449267 | 9..143 | 100 | -> | Plus |
| arm_3R | 7449323..7449448 | 144..269 | 100 | -> | Plus |
| arm_3R | 7449508..7450016 | 270..778 | 100 | -> | Plus |
| arm_3R | 7450079..7450213 | 779..913 | 100 | -> | Plus |
