UFO07122.5prime Sequence
1045 bp (926 high quality bases) assembled on 2009-09-30
> UFO07122.5prime
CAGTCGACATGTTCCACTCACTTGTTTTGATGGCCTGCGCCCTTGCCGCC
CTCTCCGTCGCCCAGGGGGCGGGGTCCGCTCGATCCAAATCGCTGCCGTT
ATCGCTATCGCTATCGGTATCGGTATCCTCGTCATTGGCATCGGCATCCA
GTCCAGGAGCTGCTGCTGACCCAACAGCCGCCTTCACCGTCACCGCGACC
GCCCCCACCCCCGCAAGTGCTCCCTTTGCCGGCAAACAGCTAAACAGATG
CCGTCAAAGTTGCTATCAGCAGCTTTCCAAGGACTGGCATTATTGTAAGG
ATTCCGTTGATTGCACAAACTGCTGCCAAAAGCTGGTGGCACCATTCGAG
TTGCGTATCCTGAAGGCCCAGCGCCAGGAGTCGCTCGTCCTAACGGACAT
CGGCTGGGATGAGATGATAGCGAATGCCTCGCGCCAGTGCCTCATCACCT
GGGAAGTGTCCGGCGGCGGGCTCATCGGCAATCTGCTAACGGACACCGCA
CGGGCGGAACTCTCCTTGTGGCCGGACACCGTCTACAACATCCAGGTCAA
GTGCAAGCACAAGCTCACGGGTCTGATGCGACGTTCGATCAAGCTAAATG
TGGACACCAGCCAGTTGGTGGGCACAACAACGACCACGACGACCAGTAAA
TCGAGTATCCAGCGGCAGCATTTGGAGCAGCCAGTGGATCATACTGATGC
CTTGGAGCACTCGCAGCACATTCGCATCCCGCGGCCCACGGATCGTGTGT
ATATAATCAGTGCACTGCCCACGCCCAGCGAAACTGGGCGGTGTGGTTTA
TCCCGGCCTTCGGGGCGCTGGCCTTCTTCCTGGCCCTGCTGGGTCATGTT
CCTCTTTCTGCGTCCGCCACCGCAAACTATTCCCTCTGGATGGCGGACAA
TTGCGGACACGGCACGTTGAATAGGTCGCAATTTCGAGCAGCTTCGAGAC
CTCATGAAGCCCTCTACCTTGCATGTACCAGCTTTCTAGAACATTCGTTG
TCGCGCGAGCCCAGTTAGGTGGCCATATCTATATATCTTAATCTA
UFO07122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fend-RC | 5133 | CG12664-RC | 895..1858 | 7..976 | 4385 | 97.5 | Plus |
| fend-RB | 3566 | CG12664-RB | 836..1799 | 7..976 | 4385 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9125330..9125656 | 892..562 | 1395 | 97.6 | Minus |
| X | 23542271 | X | 9133940..9134205 | 272..7 | 1330 | 100 | Minus |
| X | 23542271 | X | 9126060..9126302 | 563..321 | 1215 | 100 | Minus |
| X | 23542271 | X | 9127066..9127117 | 320..269 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:18 has no hits.
UFO07122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:09 Download gff for
UFO07122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 808..1754 | 1..954 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:43 Download gff for
UFO07122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 830..1776 | 1..954 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:59 Download gff for
UFO07122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 830..1776 | 1..954 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:59 Download gff for
UFO07122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9133940..9134210 | 1..272 | 98 | | Minus |
| X | 9125271..9125654 | 564..954 | 95 | <- | Minus |
| X | 9126060..9126302 | 321..563 | 100 | <- | Minus |
| X | 9127066..9127113 | 273..320 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:43 Download gff for
UFO07122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9019304..9019687 | 564..954 | 95 | <- | Minus |
| arm_X | 9020093..9020335 | 321..563 | 100 | <- | Minus |
| arm_X | 9021099..9021146 | 273..320 | 100 | <- | Minus |
| arm_X | 9027973..9028243 | 1..272 | 98 | | Minus |
