UFO07123.5prime Sequence
1134 bp (1024 high quality bases) assembled on 2009-09-30
> UFO07123.5prime
CAGTCGACATGAAAGCTTTCATTATCGCCGGAGTGTGCGTGTTGAGCGTG
CTGAGCCTGGGATCCGCTCAGTTCCAGAACGGACGTCTGGAGCCGCCGAA
TCCGCAGCTCTGTGCCCAGCGTGTCATTCACGAGAAGACTCCCGATGGCA
AGGGTTACTTCTTCTCGTGGCGCGACCCTCAGCTGAAGGGCGTGGAGGAG
GACTGGCTGACCGCCAGGAACTACTGCCGCAGGCGCTGCATGGACTCCGT
TTCCCTGGAGACCAGTTTGGAGAACGAGTGGATCAAGCAGTATGTTGTGC
GCGAGAATGTGAAATACATCTGGACCAGCGGCCGCTTGTGTGACTTCAAG
GGCTGTGACCGCCCCGATCTGCAGCCCACAAACATCAACGGTTGGTTCTG
GACCGCCACACTGCAGAAACTGGCACCAACCACTGAGAGGAACCAGGGCG
ATTGGTCGCCCACCGGAGGCATTGGCCTGCCCCAGCCGGACAACCGCGAG
TACAAGCAGAATGGAGCGCCGGAGAATTGTCTCGCCCTGCTGAATCAGTT
CTACAACGATGGCGTAAACTGGCACGATGTGGCATGCCATCACAAGAAGA
GCTTCGTCTGCGAGGAGAACGATGCTCTGCTGAAGTATGTGCGCTACACG
AACCCCAATCTGCGCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAATTCATTAGCA
TTCTGCCGACATGGAGCCATCACAAACGCATGATGACTGATCGCAGCGGC
ATCAGCACTGGTCGCTGCGTATAATATTTGCCATGGTGAAACGGGGCGAG
AGTGTCATATGCCACGGTTTATTCAACCTGCGACCCTCACAGGATGCTGA
CGAAACCATATTCTCATTACCTTAGGAAATAGGC
UFO07123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4115-RA | 1115 | CG4115-RA | 123..782 | 9..668 | 3300 | 100 | Plus |
| CG6055-RB | 1034 | CG6055-RB | 271..340 | 193..262 | 185 | 84.3 | Plus |
| CG6055-RA | 1087 | CG6055-RA | 324..393 | 193..262 | 185 | 84.3 | Plus |
| CG6055-RB | 1034 | CG6055-RB | 624..734 | 549..659 | 180 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12362563..12362922 | 309..668 | 1800 | 100 | Plus |
| 3R | 32079331 | 3R | 12360336..12360492 | 154..310 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 12360130..12360275 | 9..154 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 7471730..7471799 | 193..262 | 185 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:12 has no hits.
UFO07123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:08 Download gff for
UFO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4115-RA | 120..783 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:51 Download gff for
UFO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4115-RA | 120..783 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:05 Download gff for
UFO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4115-RA | 123..786 | 9..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:05 Download gff for
UFO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12360130..12360275 | 9..154 | 100 | -> | Plus |
| 3R | 12360337..12360490 | 155..308 | 100 | -> | Plus |
| 3R | 12362563..12362926 | 309..673 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:51 Download gff for
UFO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8185852..8185997 | 9..154 | 100 | -> | Plus |
| arm_3R | 8186059..8186212 | 155..308 | 100 | -> | Plus |
| arm_3R | 8188285..8188648 | 309..673 | 99 | == | Plus |
