UFO07124.5prime Sequence
1105 bp (995 high quality bases) assembled on 2009-09-30
> UFO07124.5prime
CAGTCGACATGGCCTCCGCGGAGCAAAGAACCGAAGTGGACGCCCTTATG
ATGGGGCCGATCTCGAAACTAAGCATGCTGCTCACTGTGGTGTCCATTCT
GTGGCGCTTCGTCTCGATTTGCATCAACTGGAGCCTGGCGTACGTGTACT
GGATGGAGGAGTCCTACGGATACTGCGCCTGGACCATTGGCTCCATTCTG
GTGCCCATGGTGGTCACATCGGTCATATATATACATACCTTGAAGAGCGC
TCATGCCGGCGAAAAACGCATCCTGGAGCGAGGGGTGTACTCAAATGCTG
TGATCTCATATCTCTTCCGCGATGTCTATGTCCTAAACTATGCGTTCAAA
TACTCGTTGGCCAAGGAGCGGGATGACAAGCAGGCGGAGATCGAATATTA
CCAAAAACTCATGACGGAGGAGTGCAATGTTAGTTTCGTTCGTCTATTCG
ACTCGTTTTTGGAATCAGCACCGCAGAAAATACTACAGCTGGCAATTCTT
TTGCAATCGACATTGGAGTTCACATACTACCGCCACATCGCCCTGATCGT
CTACTTCGGCAACATAGCGTGGTGCATCCAGGCGTACAATCACTCCAATC
GCCTGGCCCAACTGGACAAACATGATATTGCGGCGAAGGGACGATTTCTG
CAATTTCTCTTCCTGCTCTGCCTCACTGTTTCGAGAACGCTTTGCATCGC
GTATGTGGCCAGTATTTTTCCCATCGAAACGCTGATCATCTGCGCGACAC
TGGCTTGCTTTTACGGCACCATTGTGTTCTTTGTGGACTCGCCAATGATC
GCAAAATCCCGCCCCATGAACTATTCGTACTGCCTGTGCTTTGGCGTTGT
CTATCTATTTATTTTTACGCCCGTCAAGGATGCACCAACCAAATATAAGT
ACGCCTTCTATCTCACATTCTGTTTGTTGCAAATATCATCGCCTGCGCTT
TGTACATTCCCTTGTATCTTGCCACAGCCATCATTGCTTGTATATTGTCG
ATTGTTCTTGTATATCTACTACACGTACTGCCATCCGATACTGTGCGTAC
TTATTTTGCAGCTTTCTAGACATCGGTTTGGCCGCGCGGGTCAGTAATGG
TCTAT
UFO07124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32579-RA | 1296 | CG32579-RA | 180..1238 | 6..1057 | 5085 | 99.1 | Plus |
| CG32579-RB | 1317 | CG32579-RB | 180..1259 | 6..1057 | 4865 | 97.1 | Plus |
| CG32579-RC | 1009 | CG32579-RC | 180..852 | 6..678 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16324676..16325062 | 678..1057 | 1595 | 97.2 | Plus |
| X | 23542271 | X | 16323465..16323697 | 6..238 | 1165 | 100 | Plus |
| X | 23542271 | X | 16323774..16323929 | 239..394 | 780 | 100 | Plus |
| X | 23542271 | X | 16324442..16324601 | 519..678 | 770 | 98.8 | Plus |
| X | 23542271 | X | 16324079..16324209 | 395..525 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:57 has no hits.
UFO07124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:07 Download gff for
UFO07124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32579-RA | 173..1243 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:47 Download gff for
UFO07124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32579-RA | 175..1245 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:49 Download gff for
UFO07124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32579-RA | 175..1245 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:49 Download gff for
UFO07124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16324079..16324209 | 395..525 | 100 | -> | Plus |
| X | 16324449..16324601 | 526..678 | 100 | -> | Plus |
| X | 16323460..16323697 | 1..238 | 98 | -> | Plus |
| X | 16323774..16323929 | 239..394 | 100 | -> | Plus |
| X | 16324677..16325069 | 679..1064 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:47 Download gff for
UFO07124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16218112..16218242 | 395..525 | 100 | -> | Plus |
| arm_X | 16218482..16218634 | 526..678 | 100 | -> | Plus |
| arm_X | 16217493..16217730 | 1..238 | 98 | -> | Plus |
| arm_X | 16217807..16217962 | 239..394 | 100 | -> | Plus |
| arm_X | 16218710..16219102 | 679..1064 | 96 | | Plus |
