UFO07126.5prime Sequence
1068 bp (934 high quality bases) assembled on 2009-09-30
> UFO07126.5prime
CAGTCGACATGATTACAATTAAATGTAAAGACACCAATCTGGACCCGCTT
CCGGTCAAGATTGGTATTATTGGCGGTTCGGGGCTTGACGACCCAGATAT
CCTGGAACAGCGGCAGGAACGTGTGGTGGAGACGCCCTACGGAGAACCGT
CTGATGCATTGATTGAAGGCGAGATCAATGGAGTACAGTGCGTACTCCTG
GCGCGTCATGGACGCAAGCACGACATCATGCCCTCCAATGTTAACTACCG
GGCCAACATCTGGGCTCTACGCGATGTGGGCTGCACCCACTTAATTGTCT
CCACGGCATGTGGATCGTTGCGCGAGGAAATCAAGCCGGGCAACCTGGTT
GTTCCACACGACTTTATCGACAGGACTACTAAACGCCTTCAGACCTTCTA
CGATGGCAAGGCACAAAGTCCACGTGGTGTTTGCCACCTGCCCATGTTTC
CGGCATTCAGCGAACGCACCCGCAACATTCTGCTTCAGGCGGCCAAGGAG
CTGGAGATTCCCGCCCACGATAAGGCCACCATTGTGACTATTGAGGGTCC
GCGCTTCTCCTCTCGCTCGGAGAGCCACATGTTCCGTCAGTGGGGCGGGG
ACCTCATAAACATGACCACGTGTCCAGAAGTGGTGCTAGCCAAGGAGGCT
GGCCTACTTTACGGGTCGGTGGCCATTGCCACGGACTACGACTGCTGGCG
CATGGGTTGCGAGGGTGTCAACGTGCATGATGTCCTCCGTACTTTTGCCG
AGAACGTAATTAAGGTGAAGAACATTCTGGTCAACGCTGTTGGTCGAATT
GCCAAGGACGACTGGTCGGAGGACATACTAAATGACAAGCAATGCGTTTG
CAACAACACAATGTCTGGAGCCATGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGCCCATGTAAGTGGTCATAATCTTATTCATAATCATTATCTAA
TCGCTACTACCCTAGAAATCCTGGTCATGACTAGTGCGTGGATCCTCACC
GATAAAAGAACGCCGGCGCAACAGAGCGTTCCTGAACAATCAGATTGGAC
TCTGCAAGTCATACTGAA
UFO07126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtap-RC | 1392 | CG4802-RC | 248..1115 | 8..875 | 4265 | 99.4 | Plus |
| Mtap-RB | 1234 | CG4802-RB | 90..957 | 8..875 | 4265 | 99.4 | Plus |
| Mtap-RA | 1234 | CG4802-RA | 90..957 | 8..875 | 4265 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17428162..17428943 | 58..839 | 3850 | 99.5 | Plus |
| 2R | 25286936 | 2R | 17428042..17428093 | 8..59 | 245 | 98.1 | Plus |
| 2R | 25286936 | 2R | 17429001..17429038 | 838..875 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:43 has no hits.
UFO07126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:05 Download gff for
UFO07126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4802-RA | 315..1199 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:44 Download gff for
UFO07126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4802-RA | 82..966 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:04 Download gff for
UFO07126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtap-RA | 82..966 | 1..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:04 Download gff for
UFO07126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17428034..17428093 | 1..59 | 91 | -> | Plus |
| 2R | 17428164..17428943 | 60..839 | 99 | -> | Plus |
| 2R | 17429003..17429047 | 840..884 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:44 Download gff for
UFO07126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13315669..13316448 | 60..839 | 99 | -> | Plus |
| arm_2R | 13316508..13316552 | 840..884 | 91 | | Plus |
| arm_2R | 13315539..13315598 | 1..59 | 91 | -> | Plus |
