UFO07127.5prime Sequence
1152 bp (1032 high quality bases) assembled on 2009-09-30
> UFO07127.5prime
CAGTCGACATGACCGCCCCCTGCTTTGTGGGCGTCTCCTATCTACTGCTG
CTCCAGACCTACCGACTGCGCCTGGAGTACTGCCTGTGCACGCTGCAGAT
CGCCCTTTACCTGACCGAGGTGTGGTATGCCATCGTCTTCGTTTTCTCGC
TGTGTCGTCCAGTAACTTATGATGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGG
GTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAA
ATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGA
TAAAACTTGTGCTTATTTTTTCTTTACGGTCTTTAAAAAGGCCGTAATAT
CAGCTGACGGTCTGGTTATAGGTACATTGAGCACTGACTGAATGCCTCAA
ATGTTCTTTACGATGCCATTGGGATTATCACGGTGGTAATCAGTGATTTT
TTCTCATTAGCTCTAGCTCTGAAGATCCAACTCGTTAGCATACTTATCCG
AAGTTAGATCAATTACTGATGCAATTATCAGGTATGTTTCTCTATGGAGC
GA
UFO07127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11760-RB | 1908 | CG11760-RB | 417..582 | 8..173 | 830 | 100 | Plus |
| CG8116-RC | 1826 | CG8116-RC | 1316..1481 | 8..173 | 830 | 100 | Plus |
| CG8116-RB | 2812 | CG8116-RB | 1321..1486 | 8..173 | 830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8719829..8719994 | 8..173 | 830 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 742..809 | 123 | 68.1 | Plus |
UFO07127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:04 Download gff for
UFO07127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11760-RB | 410..586 | 1..179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:45 Download gff for
UFO07127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 1314..1490 | 1..179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:27 Download gff for
UFO07127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RB | 1314..1490 | 1..179 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:23:27 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:32:45 has no hits.
