UFO07130.5prime Sequence
1094 bp (980 high quality bases) assembled on 2009-09-30
> UFO07130.5prime
CAGTCGACATGCGAATAGTTATTGGATCGTTCACCGCATTTCTTTTGCTG
TTATTGCAAAACTCAAATGCCGAAATTCCCGGTTGCGACTTCTTCGACAC
CGTAGATATTTCAAAAGCGCCAAGATTCTCGAACGGATCGTACCTCTACG
AAGGCTTGCTGATCCCCGCCCATTTGACAGCTGAATATGACTACAAGCTC
CTGGCCGACGATTCGAAGGAGAAGGTGGCGAGCCACGTACGAGGATGTGC
CTGCCACCTCAGGCCATGCATTCGGTTTTGTTGCCCCCAGTACCAAAAGA
TGCAAAAGAGCAAGTGCTACGGCGACATGTCGGAGGACGAGCTGAACAAG
CACGATCCCTTCGTGAACGTGACGCTCAGCGACGGGTCGGTGGTCAGGAG
ACACTTCAAGGAGGATCTGATCGTGCAGTCGGATCTGGCCAAGCCCGGAT
GTCCCCGGATGTACTTTCTGAATCACGAACTGCCGGGCAATGAATTCACT
CTGTTTGAGAACGGCTCTCTTCTGCGTCACTGGGACAAAGTGGAACTGAG
CAAGCGGGAGTACTGCGTCCAGCATCTTTCATTTAAGGATGATAGTATCC
GAATTGCACCCCACTTCTGTCCACTTTCGTCTGAGCACTCCAGAACGTGG
AAGACCGTTGCGATAGTGATATCCTTGATATGCATAATCCTAACGATCAG
CGTGTACCTCTATGTTGAGAAGCTTCGCAACCTGCACGGAAAGTGTTTCA
TCTGCTACTTGGCCTCCTTGTTCCTGGGATATTTCTTCCTGGTCCTCAAC
GTGTGGAAATACTCCTCCGGCTTCTGCGTTACAGCAGGTTTCCTGGGCTA
CTTCTCCGTCATCGCCGCGTTCTTTTGGCTTTCTGTCATCAGTCTTACCC
TCTGGAATTCATTTAGCGGCAACTCCAGCTGGGTTGACCGTTTCTTGCCA
CAGAATCGGTTCCTTTCTTACATTTATACGCTGAGCATGCGCTGCTCTGA
CTGCATCACTATATAGCTGACAGTGATAGACGAGAGTTGAGACCCGCGTG
GCGTCGCCAAAATTGTGATCTACCTGGGATTGGACTTCATGATC
UFO07130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl3-RC | 2047 | CG6530-RC | 212..1318 | 9..1094 | 4895 | 97.4 | Plus |
| mthl3-RB | 2296 | CG6530-RB | 461..1567 | 9..1094 | 4895 | 97.4 | Plus |
| mthl3-RA | 1985 | CG6530-RA | 150..1256 | 9..1094 | 4895 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17450529..17451029 | 509..9 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 17446737..17447210 | 509..36 | 2235 | 98.1 | Minus |
| 2R | 25286936 | 2R | 17450082..17450263 | 841..660 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 17446290..17446471 | 841..660 | 850 | 97.8 | Minus |
| 2R | 25286936 | 2R | 17446527..17446679 | 660..508 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17450319..17450471 | 660..508 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17449889..17450026 | 972..835 | 630 | 97.1 | Minus |
| 2R | 25286936 | 2R | 17446183..17446234 | 886..835 | 230 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:18 has no hits.
UFO07130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:03 Download gff for
UFO07130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 90..1115 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:26 Download gff for
UFO07130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 144..1169 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:35 Download gff for
UFO07130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 144..1169 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:35 Download gff for
UFO07130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17449833..17450023 | 838..1021 | 94 | <- | Minus |
| 2R | 17450086..17450262 | 661..837 | 100 | <- | Minus |
| 2R | 17450319..17450469 | 510..660 | 100 | <- | Minus |
| 2R | 17450529..17451035 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:26 Download gff for
UFO07130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13337338..13337528 | 838..1021 | 94 | <- | Minus |
| arm_2R | 13337591..13337767 | 661..837 | 100 | <- | Minus |
| arm_2R | 13337824..13337974 | 510..660 | 100 | <- | Minus |
| arm_2R | 13338034..13338540 | 1..509 | 99 | | Minus |
