Clone UFO07131 Report

Search the DGRC for UFO07131

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:71
Well:31
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHydr2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07131.5prime Sequence

1120 bp (1031 high quality bases) assembled on 2009-09-30

> UFO07131.5prime
CAGTCGACATGTCCACCGCCTTCCTTACCCTCATCGCCGTCATCGTGTGC
ATCCTGTTCCGCATCCTTAATGTTCACAGCCAGCCGCTGAAGCCCAGTGT
GTGGTGCCTTGATGCCCACTTCCTCGACTGCCTCTACAAGATCGCGCCCG
TCCTAAGGGAACCATACATTCCCCCGCGACTTTGGGGCTTTAGTGGCCAT
GTGCAGACGGTCTTGCACAGCATTGTTGGCCGGGTACGATGTCCCTGGCC
ACTCGGAGAACGTGTTTACATGTCGCTAAAGGATGGCTCCACATTGACCT
ACGACTTGTACCAGCCACTCAACGAACAGGAGGATGACATCACGGTGGCC
ATTTGCCCGGGCATCGCCAACAGCTCGGAATCGGTGTACATTCGCACCTT
CGTGCACTTGGCCCAGTGCAATGGATACCGCTGTGCGGTGCTAAATCACA
TTGGCGCACTGCGCAGTGTCCAGGTGACCTCCACACGCATTTTCACCTAC
GGCCACACGGAGGATTTCGCGGCCATGGTAGAGCATTTGCACCAGAAGTA
CCGCCAAAGTCGAATTGTCGCGGTTGGTTTCAGTCTGGGCGGCAATCTGG
TCACCAAGTACATGGGCGAGGACCAGAAGACAAAGCCAGACAAGGTCATT
GGAGGCATATCCATATGTCAAGGCTACAATGCCGTCGAAGGCACCAAGTG
GCTGCTCAACTGGCAGAATTTCCGCCGCTTTTACCTATACATCATGACTG
AGAACGTAAAGAGCATTATCCTGCGACATCGACATATCCTCCTGTCCGAC
GAGGTCAAGGCTCGGCATAATCTCAACGAGCGCGAAATCATCGCGGCTGC
CACTCTGCCCGAGTTGGATGAGCTTACACGCGGAGAGTGTACAACTTTCC
CTCCACCCAGGAGTTGTACAGTGAGCTCGTCGCTGTTTTACTTCGATACG
ATCAGAGCCAATGATCTCATCACGCCACGATGATCCCTTGATCCCGGAGA
TTGCTGCATCCATCAGAGTATGCACGACGCGTCAACACCGCCTATGTGGA
GGTGTCATGCGTCATCTGGACTCATGAGCGCTCATGTACGATCTGTCCTT
GCTGAACGTACCTTGGGGCA

UFO07131.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Hydr2-RB 2733 CG3488-RB 275..1337 8..1054 4920 98.4 Plus
Hydr2-RA 2259 CG3488-RA 275..1337 8..1054 4920 98.4 Plus
Hydr2-RC 2383 CG3488-RC 555..1461 164..1054 4140 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3167203..3167558 333..688 1780 100 Plus
2L 23513712 2L 3167624..3167942 689..999 1205 96.2 Plus
2L 23513712 2L 3166970..3167139 164..333 850 100 Plus
2L 23513712 2L 3163919..3164074 8..163 780 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:36 has no hits.

UFO07131.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:02 Download gff for UFO07131.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3488-RA 264..1335 1..1054 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:49 Download gff for UFO07131.5prime
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 266..1337 1..1054 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:59 Download gff for UFO07131.5prime
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 266..1337 1..1054 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:59 Download gff for UFO07131.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3163910..3164074 1..163 97 -> Plus
2L 3166970..3167139 164..333 100 -> Plus
2L 3167204..3167558 334..688 100 -> Plus
2L 3167624..3167973 689..1024 95 -> Plus
2L 3168035..3168066 1025..1054 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:49 Download gff for UFO07131.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3163910..3164074 1..163 97 -> Plus
arm_2L 3166970..3167139 164..333 100 -> Plus
arm_2L 3167204..3167558 334..688 100 -> Plus
arm_2L 3167624..3167973 689..1024 95 -> Plus
arm_2L 3168035..3168066 1025..1054 93   Plus