UFO07131.5prime Sequence
1120 bp (1031 high quality bases) assembled on 2009-09-30
> UFO07131.5prime
CAGTCGACATGTCCACCGCCTTCCTTACCCTCATCGCCGTCATCGTGTGC
ATCCTGTTCCGCATCCTTAATGTTCACAGCCAGCCGCTGAAGCCCAGTGT
GTGGTGCCTTGATGCCCACTTCCTCGACTGCCTCTACAAGATCGCGCCCG
TCCTAAGGGAACCATACATTCCCCCGCGACTTTGGGGCTTTAGTGGCCAT
GTGCAGACGGTCTTGCACAGCATTGTTGGCCGGGTACGATGTCCCTGGCC
ACTCGGAGAACGTGTTTACATGTCGCTAAAGGATGGCTCCACATTGACCT
ACGACTTGTACCAGCCACTCAACGAACAGGAGGATGACATCACGGTGGCC
ATTTGCCCGGGCATCGCCAACAGCTCGGAATCGGTGTACATTCGCACCTT
CGTGCACTTGGCCCAGTGCAATGGATACCGCTGTGCGGTGCTAAATCACA
TTGGCGCACTGCGCAGTGTCCAGGTGACCTCCACACGCATTTTCACCTAC
GGCCACACGGAGGATTTCGCGGCCATGGTAGAGCATTTGCACCAGAAGTA
CCGCCAAAGTCGAATTGTCGCGGTTGGTTTCAGTCTGGGCGGCAATCTGG
TCACCAAGTACATGGGCGAGGACCAGAAGACAAAGCCAGACAAGGTCATT
GGAGGCATATCCATATGTCAAGGCTACAATGCCGTCGAAGGCACCAAGTG
GCTGCTCAACTGGCAGAATTTCCGCCGCTTTTACCTATACATCATGACTG
AGAACGTAAAGAGCATTATCCTGCGACATCGACATATCCTCCTGTCCGAC
GAGGTCAAGGCTCGGCATAATCTCAACGAGCGCGAAATCATCGCGGCTGC
CACTCTGCCCGAGTTGGATGAGCTTACACGCGGAGAGTGTACAACTTTCC
CTCCACCCAGGAGTTGTACAGTGAGCTCGTCGCTGTTTTACTTCGATACG
ATCAGAGCCAATGATCTCATCACGCCACGATGATCCCTTGATCCCGGAGA
TTGCTGCATCCATCAGAGTATGCACGACGCGTCAACACCGCCTATGTGGA
GGTGTCATGCGTCATCTGGACTCATGAGCGCTCATGTACGATCTGTCCTT
GCTGAACGTACCTTGGGGCA
UFO07131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hydr2-RB | 2733 | CG3488-RB | 275..1337 | 8..1054 | 4920 | 98.4 | Plus |
Hydr2-RA | 2259 | CG3488-RA | 275..1337 | 8..1054 | 4920 | 98.4 | Plus |
Hydr2-RC | 2383 | CG3488-RC | 555..1461 | 164..1054 | 4140 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3167203..3167558 | 333..688 | 1780 | 100 | Plus |
2L | 23513712 | 2L | 3167624..3167942 | 689..999 | 1205 | 96.2 | Plus |
2L | 23513712 | 2L | 3166970..3167139 | 164..333 | 850 | 100 | Plus |
2L | 23513712 | 2L | 3163919..3164074 | 8..163 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:36 has no hits.
UFO07131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:02 Download gff for
UFO07131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3488-RA | 264..1335 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:49 Download gff for
UFO07131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hydr2-RA | 266..1337 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:59 Download gff for
UFO07131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hydr2-RA | 266..1337 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:59 Download gff for
UFO07131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3163910..3164074 | 1..163 | 97 | -> | Plus |
2L | 3166970..3167139 | 164..333 | 100 | -> | Plus |
2L | 3167204..3167558 | 334..688 | 100 | -> | Plus |
2L | 3167624..3167973 | 689..1024 | 95 | -> | Plus |
2L | 3168035..3168066 | 1025..1054 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:49 Download gff for
UFO07131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3163910..3164074 | 1..163 | 97 | -> | Plus |
arm_2L | 3166970..3167139 | 164..333 | 100 | -> | Plus |
arm_2L | 3167204..3167558 | 334..688 | 100 | -> | Plus |
arm_2L | 3167624..3167973 | 689..1024 | 95 | -> | Plus |
arm_2L | 3168035..3168066 | 1025..1054 | 93 | | Plus |