UFO07134.5prime Sequence
1107 bp (978 high quality bases) assembled on 2009-09-30
> UFO07134.5prime
CAGTCGACATGCGTACCATTAATTCCAACCAGTGCGTGAAGATCCCTAAG
GATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCATCACCGGCACCCG
CGGCACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTGGACATGTACATGC
CCGACAAGCGCACCCTGAAGGTGGAGAAGTGGTTCGGAACCAAGAAGGAG
TTGGCCGCCGTCCGCACCGTCTGCAGTCACATCGAGAACATGATCAAGGG
AGTCACGTTTGGATTCCAGTACAAGATGCGTGCTGTGTACGCCCATTTCC
CCATCAACTGTGTCACCTCCGAGAACAACACGGTCATTGAGATCCGTAAC
TTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCTGGCGTCAC
CGTGGTCAACTCCACTGCCCAGAAGGACGAACTTATCGTGGAGGGAAACG
ATATTGAGTCTGTCTCCGGATCTGCCGCCCTCATCCAGCAGTCCACGACC
GTCAAGAACAAGGATATCCGTAAGTTCCTTGACGGTCTGTACGTGTCCGA
GAAGACGACCGTTGTGAAGCTAGAGTCTGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTTAAGCATTCTGCCGACATGGAAGCATTCACAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTT
GCCCATGGTGAAACCGGGGCGAAAAGTTGTCCTATTGCCCACGTTTAAAT
CAAACTGGTGAACTCACCAGGATGCTGAACGAAAACTATTTCTCAATAAC
CCTTAAGAATAGCCAGTTTCACCGTACCGCCCATCTTGCAATATTGTGTA
AAACTGC
UFO07134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL9-RC | 807 | CG6141-RC | 86..655 | 9..578 | 2850 | 100 | Plus |
| RpL9-RB | 798 | CG6141-RB | 159..728 | 9..578 | 2850 | 100 | Plus |
| RpL9-RA | 761 | CG6141-RA | 122..691 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11002910..11003239 | 578..249 | 1650 | 100 | Minus |
| 2L | 23513712 | 2L | 11003510..11003751 | 250..9 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:33 has no hits.
UFO07134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:07 Download gff for
UFO07134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RA | 115..699 | 1..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:48 Download gff for
UFO07134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RA | 115..699 | 1..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:28 Download gff for
UFO07134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RA | 115..699 | 1..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:28 Download gff for
UFO07134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11002902..11003238 | 250..587 | 98 | <- | Minus |
| 2L | 11003511..11003758 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:48 Download gff for
UFO07134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11002902..11003238 | 250..587 | 98 | <- | Minus |
| arm_2L | 11003511..11003758 | 1..249 | 98 | | Minus |
