UFO07136.5prime Sequence
1130 bp (1018 high quality bases) assembled on 2009-09-30
> UFO07136.5prime
CAGTCGACATGGCCCAAACGGAAGTGCTGGTGTTCGGCTCGGCCATCATT
GACTTTATAAGCTACACGACCCGTCTACCGAAAGCCGGAGAAACGCTCCA
TGGGCATCGCTTTCAGATTGGCTACGGCGGCAAGGGCGCCAATCAGTGTG
TGGCTGCCGCGCGCCAGGGATCCCGAACAGCTCTGGTGGCCAAACTGGGG
GCAGACACATTCGGCAGCGACTACCTGAGACATCTGCGCGAGGAGCGCGT
CAATGTAAACCACGTCGAGCAGCTGGCGGAGGAAACGACGGGCGTGGCCC
AGATAGCCGTGTCAGATGGCGGCGAGAACAACATCATCATTGTGGTGGGC
GCCAACAATCGACTGAGCTCGTGTGACGTTTCCTCGGCGAAGGCGCTCTT
CCAGGAAGCCAAAGTTCTGGTGTGCCAGCTGGAGACGCCCGTTGAGGCCA
CCCTGACCGCTCTGAGAGCCTTCCGGGGCGTGTCCATCGTCAATGCGGCT
CCGGCCATGGCCGACACACCCCCCGAACTTCTTCAGTTGGCCAGCATCTT
CTGTGTGAACGAAAGCGAGGCGGCACTGATGACTCAGATGCCCGACATTG
GCAACATAGAGCACGCCGAAGATGCGGTTGGAAAGCTGATAGCGGCAGGT
GCCAACACGGTGATCATAACTCTGGGCAAACTAGGAGCCGTTTTCGGTTC
CGCCGACTCCAAGGGCGTGTGCCAGCATGTGGCTGCGCCGAGTGTGCCGC
CCGAAAAAGTGGTGGGACACGACGGGGGCTGGAGACGCCTTCATTGGGGC
CTTGGCCCACAACTTGGCCCGTCATCCAACGAGGAAACTGGAGGAGCACA
TAGCCGCCGCCTGTGCCGTGACCTCGCAATCCGTTCAGCTACCCGGGACG
CAGTCGAGCTTCCCACACGCTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCATAATCATATCAC
AACTAGCCTAGGAGATCTGTCATGACTGTGCTTGATTCCTCACCAATAAA
AACGCCCGGCGCACGGACGTTCTGACATCGATGGAGTTCTGAGGTCATAC
TGATCATCAACGATTCAGCCAACTCGATTC
UFO07136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13369-RA | 1175 | CG13369-RA | 215..1126 | 9..921 | 4525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 623794..624345 | 60..611 | 2760 | 100 | Plus |
| X | 23542271 | X | 624407..624716 | 611..921 | 1490 | 99.4 | Plus |
| X | 23542271 | X | 623682..623734 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:30 has no hits.
UFO07136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:06 Download gff for
UFO07136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13369-RA | 211..1127 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:02 Download gff for
UFO07136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13369-RA | 210..1126 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:31 Download gff for
UFO07136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13369-RA | 210..1126 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:31 Download gff for
UFO07136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 623677..623734 | 1..61 | 95 | -> | Plus |
| X | 623796..624344 | 62..610 | 100 | -> | Plus |
| X | 624407..624716 | 611..921 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:02 Download gff for
UFO07136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 517710..517767 | 1..61 | 95 | -> | Plus |
| arm_X | 517829..518377 | 62..610 | 100 | -> | Plus |
| arm_X | 518440..518749 | 611..921 | 99 | == | Plus |
