UFO07139.5prime Sequence
1112 bp (994 high quality bases) assembled on 2009-09-30
> UFO07139.5prime
CAGTCGACATGCCAAATCCACTGTGGTTCGTCTTCTGGCTGCTGGTCTTC
TGGTTCGTCTCCTTCTTCGTGGCATTCTTCTGCGCCTTTTTCTACATCTG
GGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGGCATATCGGACA
TTCTGCTCCAGGGAGTCCAGTTCCCGTTCTACTGCGGGAAAGCCATGTTA
GAGGGCAAGCAAGCTTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG
CGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAAGGGTGAACA
CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCAG
ATGAGCATTCATCAGCGGCCAGGATGTGAATAAAGGCCGGATAAACTTGT
GCTTATTTTTTCTTACGTCTTTAAAAGCGTATATCAGCTGAACGGTCTGT
TATAAGTACATGGCAACTGACTGAAATGCTCAAATGTCCTACGATGCATG
GATAATTCAACGTGCCATATCAATGATTTTTCTCCAATTTAGCTCTTAGT
CCTGAGATCTAC
UFO07139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11686-RB | 487 | CG11686-RB | 169..378 | 9..218 | 1050 | 100 | Plus |
| CG11686-RA | 419 | CG11686-RA | 101..310 | 9..218 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13261642..13261771 | 9..138 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 13262037..13262118 | 137..218 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:27 has no hits.
UFO07139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:57 Download gff for
UFO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11686-RA | 93..313 | 1..223 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:43 Download gff for
UFO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11686-RA | 94..314 | 1..223 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:25 Download gff for
UFO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11686-RA | 94..314 | 1..223 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:25 Download gff for
UFO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13261635..13261770 | 1..137 | 97 | -> | Plus |
| 3R | 13262038..13262118 | 138..218 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:43 Download gff for
UFO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9087357..9087492 | 1..137 | 97 | -> | Plus |
| arm_3R | 9087760..9087840 | 138..218 | 100 | == | Plus |
