UFO07140.5prime Sequence
1102 bp (1006 high quality bases) assembled on 2009-09-30
> UFO07140.5prime
CAGTCGACATGATTGAAGTCGACGATCAAATAACGAAGCCCCTGAACTTG
GCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAGGAAGAACAACAAGCCAA
ATGTGGCTACAAGCGTGTGGCCTGGCCACCGGCCTCCGAGGAGCGGATCA
TCCGGGAGTTCACCCCCCAGCCGCAGACTCAGAGTCCGGCTCCCGGTGCC
GGAGGCTACTATCCGCAGGCCCACGCTCCCACAGCAGCAGCTGCCGCTCC
ACCTCAGCAGCAGTACGGTGCTCCGTCTTACGATGGCCAGCAGCCTGGAG
CACAGTGGCAACAGCAACAGCAGCAGCAGCAGGTTCCGCAGCAGCAGTAT
CAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGCCACCACAGTGGAACCA
GCCGCAGCAGCAGCAGCAGCAGCCATCGTACCAGGCTTCACCGTACCAAC
AGCAGCAACAGCAACAGCCATCCTATTACCCACAGCAAAATGGTGGCTCG
ACCTATGCTCAACCCCCATACAATTCTTATTCGCAGCCCCAGTTGCCCTA
CTCGCAGGATCAGACTGATCTGCAGCAGCAGCAACAACAGCAGCAGCAGC
AGTATCCGGGAGCCTACGCTGGCCAGGATAGCTACCGGGGCGCCAGTCCC
GGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCCAGAAGCCTGCACC
AGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAGGGAGGCAGCAAAT
TGCGCGGAGATTTGAAATGGCCACCACCGGAGTACAAGGAGGCCGCGGCT
CGCGAGAACGAGGAACGACGCCAGTTGGCGTTGGGTCCCGTCTGCCGTCC
CAGGAGAGTTAACCGGGACTACACACCCTTCTTTGCCAAGCACCAGTTGA
ACAATGGCTATCCCAGCTACAAGTGCCTCCGGGCACCCAGCACATTTTCG
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCA
TATCATATCATATCATATCATATCACACTAGCCTAGGAGATCTGTCATGA
CTATGCTGATTCTCACCAATAAAACGTCGCCGCCACGAGCGTTTGACATC
CG
UFO07140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RE | 2515 | CG43897-RE | 240..1182 | 9..950 | 4690 | 99.9 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 783..1723 | 11..950 | 4680 | 99.9 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 526..1466 | 11..950 | 4680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832196..9832680 | 255..739 | 2425 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 105..257 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 738..867 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9824546..9824641 | 11..106 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833012 | 866..950 | 380 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:51 has no hits.
UFO07140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:56 Download gff for
UFO07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 769..1022 | 5..257 | 98 | -> | Plus |
| CG33205-RC | 1463..2165 | 258..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:40 Download gff for
UFO07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1191 | 9..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:44 Download gff for
UFO07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1191 | 9..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:44 Download gff for
UFO07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9824546..9824640 | 11..105 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 106..257 | 100 | -> | Plus |
| 3L | 9832199..9832679 | 258..738 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 739..866 | 100 | -> | Plus |
| 3L | 9832928..9833017 | 867..956 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:40 Download gff for
UFO07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817646..9817740 | 11..105 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 106..257 | 100 | -> | Plus |
| arm_3L | 9825299..9825779 | 258..738 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 739..866 | 100 | -> | Plus |
| arm_3L | 9826028..9826117 | 867..956 | 95 | -> | Plus |
