UFO07144.5prime Sequence
1085 bp (993 high quality bases) assembled on 2009-09-30
> UFO07144.5prime
CAGTCGACATGTATGCACTCTCCAGTTCTTTGATCCGCTCTCCGGCGCTG
CGCCAGGGCCTCCAGATGGCCGCTGCCAGCCGCCCGGTATCGATGAAGGT
GGTTTCCGTGGCCGAAACCCAGAAGGACGAGTCGTTCTTCGAGAAGAACG
AGCGCTTGGGCAGGGAGCTGTCGCCCCATCTGACCATCTACCAACCGCAG
CTGACCTCCATGCTCTCGATCTGTCACCGCGGCACAGGATTGGCCCTGGG
TGTGGGTGTTTGGGGTCTGGGATTGGGCGCTCTGATCTCGTCCCACGACA
TTAGCCACTATGTGACCATGGTGGAGGGCCTCCAGCTGAGTGGCGCCACT
CTGACCGCCCTCAAGTTTATCATCGCCTATCCGGCTGGCTATCACACCGC
CAATGGTATTAGGCATCTCCTCTGGGACACCGGACGGTTCCTGAAGATCA
AGGAGGTTTACTCCACCGGTTACGCAATGGTCGCCACCTCTTTCGTGCTA
TCCGCTATCTTGGCCCTGCTCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGG
TGAAACGGGGGCGAGAGTTGTCATATTGCCACGTTTAAATCAAACTGTGA
ACTCCACCAGGATGCTGAACGAAACTATCTCATACCCTTAGGAATAGCAG
TTCACGTACACGCCCATCTGCAATATATGTGTAGACTGCGATCGTCTGCA
ATTCATCGACGATGAACGGTCAGTTGCCATGAACG
UFO07144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhC-RB | 906 | CG6666-RB | 51..563 | 9..521 | 2565 | 100 | Plus |
| SdhC-RA | 656 | CG6666-RA | 51..563 | 9..521 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11209230..11209740 | 521..11 | 2555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:24 has no hits.
UFO07144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:53 Download gff for
UFO07144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6666-RA | 44..567 | 1..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:41 Download gff for
UFO07144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhC-RA | 44..567 | 1..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:23 Download gff for
UFO07144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhC-RA | 44..567 | 1..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:23 Download gff for
UFO07144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11209230..11209743 | 8..521 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:41 Download gff for
UFO07144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7034952..7035465 | 8..521 | 99 | | Minus |
