UFO07145.5prime Sequence
1118 bp (999 high quality bases) assembled on 2009-09-30
> UFO07145.5prime
CAGTCGACATGGCGATGATGGCAGCGCTTGCCTCGCTCTTTCTGCTCGTC
ACGCTGGCCAGCTCAGCCCGTGCCATTACCTGCTACGAATGTGATTCCGT
CAATAATCCAGGGTGTGGGGAGCGATTTGTGGGCGATGACATATCCACGA
CGGATTGCGATGTGGTGGCGAACATGCGATCCCTGGGAGCGGAGGCCACT
TGCCTTACCAAGTACCATGAGGGAATGCCAGGAGACACGCGCTTCGTGAG
GCGCTCCTGTTACTTTGGCGATGCCTCCCCAATAGGCGTCAGTTGCGACG
ATGGACCAGATCCTGTGGTGCCCTTTATGAACTTCCTCGGCTGCACACTG
TGCGATACGGATTTGTGCAACGCAGCCGCTGGATTATCCACACTACCCTT
GGTCATTGCCCTTTCGATACTCGGACTGCTTGTCCTACTGGCGACCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCATAAACCCTTTAGGAAATAGGCCAGGTT
TCACCGTACACGCCACATCTGCGAATATATGTGTAGAACTGCGAAATCGT
CTGTATTCACTCAGAGCGATGAAACGTTCAGTTTGCTCATGAAACGTGTA
CAGTTGAACCTATCCATATCACAGCTACGTCTTCATGCCAACGAATCCGG
TAGACTCTCAGCGGACAG
UFO07145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14401-RA | 1231 | CG14401-RA | 281..718 | 9..446 | 2190 | 100 | Plus |
| CG14401-RC | 1150 | CG14401-RC | 281..730 | 9..446 | 2060 | 97.3 | Plus |
| CG14401-RB | 1294 | CG14401-RB | 495..874 | 67..446 | 1900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20870832..20871052 | 226..446 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 20870598..20870760 | 63..225 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 20870134..20870191 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:10 has no hits.
UFO07145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:53 Download gff for
UFO07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14401-RA | 280..728 | 1..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:54 Download gff for
UFO07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14401-RA | 274..722 | 1..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:24 Download gff for
UFO07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14401-RA | 274..722 | 1..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:24 Download gff for
UFO07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20870127..20870191 | 1..66 | 94 | -> | Plus |
| 2L | 20870602..20870760 | 67..225 | 100 | -> | Plus |
| 2L | 20870832..20871052 | 226..446 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:54 Download gff for
UFO07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20870127..20870191 | 1..66 | 94 | -> | Plus |
| arm_2L | 20870602..20870760 | 67..225 | 100 | -> | Plus |
| arm_2L | 20870832..20871052 | 226..446 | 100 | == | Plus |
