UFO07153.5prime Sequence
1062 bp (1019 high quality bases) assembled on 2009-09-30
> UFO07153.5prime
CAGTCGACATGAAATTCCTATCACTCGCCTTCGTTTTGGGTCTGCTGGCT
CTGGCCAACGCCACTCCCCTGAATCCTGGCAATGTCATCATCAATGGCGA
TTGCCGCGTCTGCAATGTGAGGGCCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAA
GGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACG
AAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCG
GATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAATA
TCCAGCTGACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCC
TCAAATGTTCTTTACGATGCCATTGGGATATATCACGGTGGTATATCAGT
GATTTTTTCTCCATTTTAGCTCGTAGCTCTGAGATCATACTCGTATAGCA
AATATACGAGTA
UFO07153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IM3-RB | 769 | CG16844-RB | 289..407 | 7..125 | 595 | 100 | Plus |
| IM3-RA | 301 | CG16844-RA | 65..183 | 7..125 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18388307..18388372 | 60..125 | 330 | 100 | Plus |
| 2R | 25286936 | 2R | 18388183..18388236 | 7..60 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 694..761 | 123 | 68.1 | Plus |
UFO07153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:49 Download gff for
UFO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM3-RA | 59..186 | 1..130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:45 Download gff for
UFO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM3-RA | 60..187 | 1..130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:47 Download gff for
UFO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM3-RA | 60..187 | 1..130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:47 Download gff for
UFO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18388178..18388236 | 1..60 | 95 | -> | Plus |
| 2R | 18388308..18388372 | 61..125 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:45 Download gff for
UFO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14275813..14275877 | 61..125 | 100 | == | Plus |
| arm_2R | 14275683..14275741 | 1..60 | 95 | -> | Plus |
