UFO07156.5prime Sequence
1124 bp (1034 high quality bases) assembled on 2009-09-30
> UFO07156.5prime
CAGTCGACATGGCCGCCAAGACGGACGAATCGTCGCCAGCCGTGGCGTCA
AGCACAAGCAGCAATCCCGCTCCCTCCAGCGGACGCCACCAGTTGCGACC
CGTGAAGTTTGACTACGCGGACTCATTCGCCTGCACTTACATCGTTTCCG
TGGTGGCCGCCTCCATTGCAGAGCTCGCGACCTATCCCTTGGACCTGACC
AAGACGCGTCTGCAGATCCAGGGCGAAGGAGCCGCCCATTCGGCGGGAAA
GTCCAATATGCAATACCGCGGCATGGTGGCCACCGCCTTCGGGATTGCGC
GTGAGGAGGGCGCCCTGAAGCTGTGGCAGGGCGTAACGCCGGCGCTCTAC
CGACACGTCGTCTATAGCGGTGTGAGGATCTGCAGCTACGACCTGATGCG
CAAGGAGTTCACACAGAACGGCACCCAGGCTCTGCCGGTTTGGAAGTCGG
CGCTGTGCGGCGTCACGGCCGGAGCCGTTGCCCAGTGGCTTGCCTCGCCC
GCTGACCTCGTCAAGGTGCAAATCCAAATGGAGGGCCGACGACGTCTGAT
GGGCGAGCCACCGAGGGTGCACTCCGCTGGCCATGCCTTCCGCCAGATCG
TGCAGCGTGGCGGAATTAAGGGCCTGTGGAAGGGCAGCATCCCGAATGTG
CAGCGAGCGGCGTTGGTCAATCTGGGCGACCTAACCACATACGACACCAT
CAAGCACCTGATCATGAATCGCCTGCAGATGCCCGACTGTCACACAGTGC
ACGTGCTGGCCTCCGTTTGTGCCGGATTCGTGGCAGCGATCATGGGCACG
CCAGCTGATGTGGTGAAGACGCGCATCATGAACCAGCCCACCGACGAGAA
TGGGCCGGGGCCTGCTCTATCGCGGATCCGTGGACTGCCTGCGACAGACG
GTTTCGAAGGAGGGCTTTGTGGCGCTGTACAAAGGCTTTCTGCCCTGCTG
GATACGAATGGCGCCGTGTCGCTCACCTTCTGCTGTCCTCGAACAGATCC
GCAGATGATCGGAGCCTCCGCTACGCAGCTTTCTAGACATCGTTTGGCGC
GCGGCCAAGTTAGTGTTCATATCATATCATATCATAATCATATCCCACTA
GCTAGGAATCTGTATGACTATGCC
UFO07156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4A-RB | 2022 | CG6492-RB | 433..1447 | 9..1020 | 4955 | 99.5 | Plus |
| Ucp4A-RA | 1803 | CG6492-RA | 493..1507 | 9..1020 | 4955 | 99.5 | Plus |
| Ucp4A-RC | 1693 | CG6492-RC | 742..1397 | 368..1020 | 3160 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17846929..17847416 | 366..853 | 2440 | 100 | Plus |
| X | 23542271 | X | 17845510..17845758 | 9..257 | 1245 | 100 | Plus |
| X | 23542271 | X | 17847481..17847648 | 857..1020 | 640 | 97.6 | Plus |
| X | 23542271 | X | 17846683..17846792 | 258..367 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:59 has no hits.
UFO07156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:44 Download gff for
UFO07156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 444..1476 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:09 Download gff for
UFO07156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 483..1517 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:23 Download gff for
UFO07156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 483..1517 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:23 Download gff for
UFO07156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17845500..17845758 | 1..257 | 98 | -> | Plus |
| X | 17846683..17846792 | 258..367 | 100 | -> | Plus |
| X | 17846931..17847419 | 368..857 | 99 | -> | Plus |
| X | 17847482..17847648 | 858..1020 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:09 Download gff for
UFO07156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17739533..17739791 | 1..257 | 98 | -> | Plus |
| arm_X | 17740716..17740825 | 258..367 | 100 | -> | Plus |
| arm_X | 17740964..17741452 | 368..857 | 99 | -> | Plus |
| arm_X | 17741515..17741681 | 858..1020 | 97 | == | Plus |
