UFO07157.5prime Sequence
1113 bp (1004 high quality bases) assembled on 2009-09-30
> UFO07157.5prime
CAGTCGACATGAAGTCGATGCGCACAGCGACATCGCTGGCTTTGGTCCTG
CTCCTGGCCACCAGCTACGTCCGAGCTGAGGACGAGAAGGCCGCCGCTCC
CGCCGAGGAGAAGAAGGCTGAGCCGGAGGCCAAGGCTGCCGAGGCAGCGG
CTAGCGAGGATACGACCAAGTCGAAGAGAGGACTGCACCACTACGAGGAC
TATCACCATCATCACGTGCCTCACTTCCCGGTGCACGAGGAGAAGACACT
GACCGTCATTAAGAAGGTGCCAGTGCCCGTGCCCATCGAGAAGATCGTAC
ATGTGCCCGTCGAGAAGCACATCCATGTGCCCGTTAAGGTCAAGGTGCCA
AAGCCCTATCCGGTGATCAAACACATTCCCTACGAGGTGAAGGAGATCGT
GAAGGTTCCCTACGAGGTGCCAGCTCCCTATCCCGTCGAGAAGCAGGTCC
ATGTGCCCGTCCATGTGCACTACGACCGACCAGTGCCCGTTAAGGTTCAT
GTGCCCGCTCCCTACCCAGTCGAAAAGAAGGTCCATGTGCCAGTGAAGGT
TCATGTTCCGGCTCCCTATCCAGTCGAAAAGATTGTCCACTACAATGTTG
AGAAACACGTGCACGTCGACAAGCCATATCCCGTGGAGAAGGTTGTCCAC
TACCCGGTGAAGGTGCCCGTCGACAAGCCAGTGCCCCACTACATCGACAA
ACCAGTGCCCCACTATGTGGACAAACCAGTGCCAGTGCCCGTGATCAAGA
AGGTGCCAGTGCCCGTCCATGTGCCCTATGATCGTCCCGTGCCCGTTCAT
GTCGAGAAGCCAGTGCCCTATGAGGTCAAGGTCCATGTGCCCGCCCCCTA
CCCGGTGATCAAGGAAGTGCCAGTGAAGTGGAGAAACACGTTCCGTACCC
GGTCAAGATCCCCGTGAGAAGCCCGTCCATGTTCACATCGAGAGCACGTG
CCGGATACCATGAGAGCATGTCACTACAGAGCCGAGTCCACCACAGCACA
TCGAGAGATCATCACCACGCGCCCATCATCACAATCGCACCCCATTGTGA
ACATGAAGCACGAGGGTGGACATGACTGCCTCTCATGAATTATCCATCAT
TACGGTACCTAGG
UFO07157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16886-RA | 2433 | CG16886-RA | 193..1295 | 8..1094 | 4970 | 97.8 | Plus |
| CG16886-RB | 2326 | CG16886-RB | 193..1264 | 8..1064 | 4935 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13922523..13922999 | 496..20 | 2385 | 100 | Minus |
| 2L | 23513712 | 2L | 13921986..13922462 | 965..493 | 2185 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:15 has no hits.
UFO07157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:43 Download gff for
UFO07157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 184..1306 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:56 Download gff for
UFO07157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 187..1309 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:47 Download gff for
UFO07157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 187..1309 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:47 Download gff for
UFO07157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13921831..13922460 | 495..1106 | 95 | <- | Minus |
| 2L | 13922525..13922998 | 21..494 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:56 Download gff for
UFO07157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13921831..13922460 | 495..1106 | 95 | <- | Minus |
| arm_2L | 13922525..13922998 | 21..494 | 100 | <- | Minus |
