UFO07159.5prime Sequence
1112 bp (1005 high quality bases) assembled on 2009-09-30
> UFO07159.5prime
CAGTCGACATGAAGGAGGCCAACTTGGAGGATCAGTATGCCAGTTTTCCG
GAGATCAGGCGACCGGAGGTGCTGAAATTTCTGGACTGGATCCACGCGCA
GCCGCACATCTCGGATAGGTTTTCCGAGGGCGAGGCACTGCACTTCTTTC
ACGCCTGCCGCTACAGCATGGAGGTGGCCAAGCAGGTCCTGGACACCAAT
CTCACGGCCCGCACCCACCTGGAGGAGTTCTTCGTGAACCTCGATTGCGA
GCGGCCCGAGATCAGGCGCGCCATGCGAACAGTCTCTATTGTTCCCCTGC
CAGGAGCCACTCCCGAAGGATACCGGGTGATTCTCGCCAAGCTTGATGAC
CTGAATACCTCAAATTATAATTTTGCAGATGTCATGAAGCTCTATTGCAT
GGTGTTTGACTTTTGGATGTATGAAGATGGCATTCAGCCGGGACACGTTA
TTGTAATCGATCTGAAAAACACTTCCTTGGGGCATGTAGCCCGCATTGGA
CTCTTGCAAATGAAGAAGTTCCTTTACTACCTGCAGGAAGCGGCTGCCAT
CCGGTTGATAGGCTTTCACTTCATCAACATTGTACCGTTCATGGACAAGA
TTCTTGCGCTGATGACTCCGTTTATGAAAAAGGAACTGACCACTGTGCTC
CATATGCACAGTGACCTAAAGGAATTCTACAAGTTTGTGCCCCAGGAAAT
GCTTCCCAAGGAATATGGTGGTCAACTGGAGGAGGCAAACGTGGCGAAAG
AGATTTACTATAAGAAGTTGCTGGACAATCGAAAGGAAATGATCGAGTTT
GAGACTCGCCACCAGGTGAACGAGAAATTGCGACCCGGCAAGGCCAAGAA
TGCATCCGACTTATTCGGGATTGAGGGAAACTTCAAGAAGTTGGATATCG
ATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCA
TATCATATCATATCATATCATATCACACTAGCTAGAGATCCTGTCATGAC
TAGTGCTGATCTCACATAAAAAACGCCCGCGCACGACGTTCTGAACAATC
AGATGGAGTTCTGAAGTCATACTGAATTATCAAGGAGTTCAGCGATGAAT
CAATTAGCCCGC
UFO07159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11550-RA | 1060 | CG11550-RA | 84..977 | 9..902 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31679523..31679797 | 283..9 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 31678431..31678647 | 750..534 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 31678230..31678383 | 902..749 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 31678700..31678845 | 537..392 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 31679333..31679440 | 391..284 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:12 has no hits.
UFO07159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:52 Download gff for
UFO07159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11550-RA | 72..980 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:23 Download gff for
UFO07159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11550-RA | 72..977 | 1..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:31 Download gff for
UFO07159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11550-RA | 72..977 | 1..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:31 Download gff for
UFO07159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31679523..31679805 | 1..283 | 98 | | Minus |
| 3R | 31678230..31678381 | 751..902 | 100 | <- | Minus |
| 3R | 31678431..31678644 | 537..750 | 100 | <- | Minus |
| 3R | 31678701..31678845 | 392..536 | 100 | <- | Minus |
| 3R | 31679333..31679440 | 284..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:23 Download gff for
UFO07159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27505245..27505527 | 1..283 | 98 | | Minus |
| arm_3R | 27503952..27504103 | 751..902 | 100 | <- | Minus |
| arm_3R | 27504153..27504366 | 537..750 | 100 | <- | Minus |
| arm_3R | 27504423..27504567 | 392..536 | 100 | <- | Minus |
| arm_3R | 27505055..27505162 | 284..391 | 100 | <- | Minus |
