UFO07161.5prime Sequence
1081 bp (986 high quality bases) assembled on 2009-09-30
> UFO07161.5prime
CAGTCGACATGGCGGCTAAGAAACTGGATGCCATAATCTTCGGTGCCTCC
GGGTTTACCGGAAAGTACACCGTCTTCGAGGCTGTCAGCGTGCTGAAGGG
GCTGCAATGGGGCATCGCCGGACGCAACCAGGAGAAGCTGCAGTCGGTGC
TGCGGGAGATGGGTGCAAAGTCCAAGACAGACCTCTCCCAAACGCCGATC
GTCATCGCGGACGTGAACAACGAGGCGTCACTGCTAGAGATGGCCAAACG
CTGCCGCATTTTAGTCAATACGGCCGGACCATATCGGTTCTTCGGCGAGC
GAGTGGTCAGGGCTTGCATCGAGGCGGGAACGCATCACGTAGACGTAAGC
GGAGAGCCACAGTACATGGAAACCATGCAGCTGCGCTACCATGATCTCGC
CAAGGAGCGTGGCGTGTACGTGATCAGTGCGTGCGGCTTTGATTCCATTC
CCGCCGACATGGGAGTCACCTTCGTGGAGAAGAACTTCGACGGCGTGGTC
AACTCAGTGGAGAACTTTGTCCATCTGGGCGTCAAGGGAGGTACCAAGGG
AACGGGCAGTGCTGCACTCAACACCGGCACCTGGGAGAGCGCCATTCACG
CTATCGCCAACCGGAGCGAGTCCGTGGCCATCCGGCGCAAGTTGTTTCCC
GAGCGTCTGCCCAACTTTCATCCGGCTCTTAAGTCACGATCGCCGCTTTC
CCGTGCCGCGGAAGTGGACAACAAGGTGATCCTGCCGTTCCCTGAAACAG
ATCGCTCGGTGGTGATGCGCTCGCAGCGTTTCCTTTACGAACTGGAGAAG
AAGCGACCCGTTCAGATGCAGCCTACATGACGTATCCCTCATGGGTTTGC
GGCCAGCGTTGTCGTGCTCTTCGCCTCTATCATTGCATTATGGGCCAAGT
TCTCCTTTGGCGCAGCTGCTGCTTAAGTACCCCACGTCTTCTCGGCGCAT
GCTTCCCGCGAGGTCCCAGTGAGCGCGATGAGCGCTCTCTCAGATGACAT
GAGCACAGCTGACCAGTCGAAACCTAGCGGACACGATCAGTACCCTCTCG
CCAAAGACCTGACGTGAGGCTACGCTCGATC
UFO07161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5167-RA | 1576 | CG5167-RA | 193..1181 | 9..987 | 4575 | 98.4 | Plus |
| CG2604-RB | 1636 | CG2604-RB | 151..645 | 23..517 | 810 | 78.1 | Plus |
| CG2604-RC | 1631 | CG2604-RC | 146..640 | 23..517 | 810 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12406724..12407652 | 9..935 | 4350 | 98.6 | Plus |
| 3R | 32079331 | 3R | 5222623..5223117 | 517..23 | 810 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:20 has no hits.
UFO07161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:40 Download gff for
UFO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 186..1183 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:54 Download gff for
UFO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 186..1183 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:46 Download gff for
UFO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 186..1183 | 1..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:46 Download gff for
UFO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12406717..12407714 | 1..990 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:54 Download gff for
UFO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8232439..8233436 | 1..990 | 97 | | Plus |
