UFO07162.5prime Sequence
1151 bp (1059 high quality bases) assembled on 2009-09-30
> UFO07162.5prime
CAGTCGACATGGCTCAGGTTAAACCGAAAAGTAACAAACAGAGCGGCAAA
CCAGTGCCGGCCGCCAAAAAGAGCGTCCAAGAGAAGAGCAGCGCGCAGCA
GAAGAAGAACAAACAGAAGGCCGCGGCAGAAAAAAAGAAATGCGGATGCT
GCAAGTGGACCTTGGGTAGCATCTTCATCATCGCCCTGATTGCCGGAGCT
CTGTACTACGATACCGAGGTGAACGGCAAGGGCGTGTTCGAGAAATCGGC
CACCGGCAAGGTGCTGAAAAATGCCGGAGTCCTGCCGCATGTCCAGAAGT
CCTGGTACACGGTCATGGGGGCCGGAGCGCGGGGCTACAAGTGGGCGGAA
GTGAATGTGCCGCCGTACGCCGAGCCGGTGATCAAGACCACCTGTGACCT
GTGGAAGCTGGCGAGGAATGCGGCCTGCAACGCTTACCAGAACGGCAAGG
GATACTTTGGCGCCAAATGGCCCGTTGTGGCAAAGTTCATTGACCAATAC
GTGCCCAATTCGTCTGGCAAAATCGAAGCTTTTGCCGCTGGCGTTAGCGA
TTTAGCCGCCAGCAGCTATGAAAAGGCTGCAGCGCTCATCAAGGAAAAGG
TGCTTGTTGGCCGTCTCTCGCCCGAGAACATCAATCAGGCGCTGAACCAG
ACGCGTAACGCCGCCCTGGAGTACTACAACCAGTTTCACAAAAAGGTCGA
CGCATACGCCAAGCTCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACCTCATCGCAGTACTGTTGTATCATTAGC
ATTCTGCGACATGCAAGCCATCACAACGGCATGATGACTGATCGCAGCGG
CATCAGCACTTGTCGCTGCGTATATATTTGGCCATGGTGAAACGGGCCAA
AAGTGTCATATTGGCCAGTAATCAACTGGGCACTCACCCAGGATTGGCTG
A
UFO07162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33129-RH | 1661 | CG33129-RH | 248..958 | 9..719 | 3555 | 100 | Plus |
| CG33129-RG | 1782 | CG33129-RG | 369..1079 | 9..719 | 3555 | 100 | Plus |
| CG33129-RC | 1473 | CG33129-RC | 60..770 | 9..719 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10965993..10966411 | 488..70 | 2095 | 100 | Minus |
| 2L | 23513712 | 2L | 10965792..10965910 | 607..489 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 10965608..10965719 | 719..608 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 10966502..10966564 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:32 has no hits.
UFO07162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:39 Download gff for
UFO07162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RC | 109..819 | 9..719 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:53 Download gff for
UFO07162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RC | 60..770 | 9..719 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:59 Download gff for
UFO07162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RC | 60..770 | 9..719 | 100 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:59 Download gff for
UFO07162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10965608..10965719 | 608..719 | 100 | <- | Minus |
| 2L | 10965792..10965910 | 489..607 | 100 | <- | Minus |
| 2L | 10965993..10966409 | 72..488 | 100 | <- | Minus |
| 2L | 10966502..10966564 | 9..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:53 Download gff for
UFO07162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10965608..10965719 | 608..719 | 100 | <- | Minus |
| arm_2L | 10965792..10965910 | 489..607 | 100 | <- | Minus |
| arm_2L | 10965993..10966409 | 72..488 | 100 | <- | Minus |
| arm_2L | 10966502..10966564 | 9..71 | 100 | | Minus |
