UFO07163.5prime Sequence
1107 bp (1011 high quality bases) assembled on 2009-09-30
> UFO07163.5prime
CAGTCGACATGGAAGCAGATCAAGCAGCAAGCAAGGAAGCCGAATCATGC
ATCGACCTCTTGGTGATCGTCCTGGACACGAACCCCTCCCAGCACTTCGT
GCGCCAGAACCCACAGAACCTCACGCAAATCCTGGAGGCGGTGATTGCCT
TTGGGAATGCTCACCTGATGCAGAAGGCCCAGAACAAACTGGCTGTGGTA
TCCTGCTCCCACCATGCCACAAACTTCCTGTATCCGCTGCCCAGAAGACA
AGTGGAACTGCGCCAAGTGGATGGGCAGTACGAGGCGTTTAATCTGGTGG
AGAAGACGGTGAAGCAGCAGCTGGGCAGCATCCTGATGAACGCACCACGG
CTCAGCGCTCCTTGTGAGAGTCTCCTGGCCGGCAGCATGTCCATGGCGCT
GTGCTACATATCAAGGCTCCAGAGGAATCTGGCTCCTGGCGTCAAGATGC
ATTCCCGCATCCTGGTCGTCACAGGCAGCAACGAGTGCGCCTCGCAGTAC
ATGACGTTCATGAACGTCTTCTTCACCGCCCAGAAACTGGGCATCACGAT
CGATACCTGCGCCCTGGACAAGACCCTCAGTTTGCTACAGCAAGGCTGTG
ACATTACCTCCGGACAGTTCCTCAAGGTCACCCAGCTGGACGGCCTGCTG
CAGTACCTCCTGTGGGTCTTCCTGCCCGCCCCGCAGATCCGTCACAAATT
GGTCCTGCCGCCACCGCCCAAAGTGGACTACCGCGCCTCCTGCTTCTGCC
ATCGTGAGCTGATCGACATTGGCTACGTCTGCTCGGTTTGCCTCTCGGTC
TTCTGCAAATACAGTCCCATATGCACCACTTGCCACACCATTTTCAAGAA
TCCCGGTCCTCTGCCCATCAAGGGCAAAAAGAAAAGAGACCGACAAGCAA
ATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGT
CATATCATATCATAATCATAATCATAATCACACTAGCTAGAGATCCTGTC
ATGACTAGTGCTTGATCCCACATAAAAACGCCCGCGCACGGACGTCTGAC
AATCAGATGGAGTCTGAGTCATACTGATCTATCACGGATCAGCGCCCGAA
TCATTAG
UFO07163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tfb4-RA | 999 | CG5041-RA | 31..927 | 9..903 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1149651..1150070 | 835..416 | 2100 | 100 | Minus |
| 2L | 23513712 | 2L | 1150131..1150326 | 416..221 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 1150379..1150561 | 220..38 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 1149517..1149586 | 903..836 | 270 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:05 has no hits.
UFO07163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:38 Download gff for
UFO07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb4-RA | 18..928 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:29 Download gff for
UFO07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb4-RA | 22..932 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:01 Download gff for
UFO07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb4-RA | 22..932 | 1..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:01 Download gff for
UFO07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1150379..1150559 | 40..220 | 100 | <- | Minus |
| 2L | 1149651..1150069 | 417..835 | 100 | <- | Minus |
| 2L | 1150131..1150326 | 221..416 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:29 Download gff for
UFO07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1150379..1150559 | 40..220 | 100 | <- | Minus |
| arm_2L | 1149651..1150069 | 417..835 | 100 | <- | Minus |
| arm_2L | 1150131..1150326 | 221..416 | 100 | <- | Minus |
