UFO07172.5prime Sequence
1126 bp (990 high quality bases) assembled on 2009-09-30
> UFO07172.5prime
CAGTCGACATGGCATGCGCCAAGAAATTGCTTTTTCGCGTTTTCCTGAAT
AACTCTTTGACGGCGAACCGCACAATCACCATGTCCGCCGCGCGACGTGC
CGAGGAGGCCATTGAGAAGCTGAAGGAGGACAATCCCTACTACTCCAAGT
ACGCGAGCAAGATTGCCAAGTTGCAGCAGACGTCGGCTGAGGAGTTCCTG
GATCGCGTGGAGCGTGTGGTGAATCCCATCAAAGATGGGCAGAGCCAGGC
CAGGTCCTACTCCGAGCTTCTGAATCCCAAGCAAAAACTGCAGGCTGAGC
AGGCAGCTGAACTGCCCCACAAGAAGCTCACTGATATCATGAAACTGGAA
CTGATTGAGGACAAGACCGCCGAAGAGGTCTCCCAGATTTGGCTGGAGTA
CCATAAGACCAAGGAGGTCCTGGCCGCCACTCTAAGCACATCTCAGTACG
AGAACCTCATGGCGCGCGCCAAGGAGCACCCCGTCTTTCTGCTGCCACTG
CCCCGCAGTGAGGGATTCGAGTTTGTCATGCTCCAGTTCGCAGCCAACAC
CGTGCACTTCACTCCGCTTTTGGCGTACCAGGTGCACCATGAGAACGCTC
CGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACAAGGGTGTA
GTTCTCATGCGCGGTGAATACGACACTAAGGTACTCACAGCCCAGGAGGC
TCAGTGTCTGGCCAATGAGTTGCAGATGTTCTACCTGAAGCCCGACGAGG
GCAAGCTGCGCTTGCTGAACACTTTTACCCGTAAGCCGGACGAGTTCAAG
CACATGGATCTAATTAAAGGAAGTTGAGAACATACAGCTGGTCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGAGATCCTGTCATGAC
TAGTGCTTGATTCTCACCAATAAAAAACGCCCGCGCACCGAGCGTCTGAC
AATCAGATGAGTCTGAGTCATACTGGATCTATCACAGAGTCAGCGAGCTC
GAATATCAATACGCCCGGCCTGCACTCAATCGCGTACTGTGAATCATAGC
ATTCTGGCGACTTGGAGCATCACAAA
UFO07172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10340-RA | 938 | CG10340-RA | 44..877 | 9..843 | 4150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16613459..16614051 | 843..250 | 2920 | 99.8 | Minus |
| 3R | 32079331 | 3R | 16614102..16614348 | 255..9 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:06 has no hits.
UFO07172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:41 Download gff for
UFO07172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10340-RA | 34..878 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:13 Download gff for
UFO07172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10340-RA | 38..882 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:27 Download gff for
UFO07172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10340-RA | 38..882 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:27 Download gff for
UFO07172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16613454..16614047 | 254..849 | 99 | <- | Minus |
| 3R | 16614104..16614353 | 1..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:13 Download gff for
UFO07172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12439176..12439769 | 254..849 | 99 | <- | Minus |
| arm_3R | 12439826..12440075 | 1..253 | 98 | | Minus |
