UFO07176.5prime Sequence
946 bp (273 high quality bases) assembled on 2009-09-30
> UFO07176.5prime
CAATCGACATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAGCCACAAC
AAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAATATATCGCC
GACTCTCTCGATGAACGGCAGCTCCAACGAAGCTTCTAACTTGCATCCGT
TGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAGATGACTTCGGCATG
TCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAGATGGAAT
GATGGCCCAGTCGCCCTCACAGGGAGGCAATGGACCGCAATCGGCGTTGA
CCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGAATTCACC
CCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGATAAGGAACAA
CGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGACATGGTTC
TGGAGCAGCGCGTCATCGAACTGACCAAAGAGAACCATGTGCTGAAGGCC
CAGCTGGACGCCATACACAACAAGTTCAACATCTCCGGCAAGAATCTGGT
GAGCGTGGAGAATATCCTCGCCTCGCTGCCCACCAGCGAACAGGTGCTGA
GTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGCTCCTCCTCGGGC
TCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATCGCCTCAAGGTGGCCA
CAATGTCTATCCGGTGAGTCCACCACTATCTCCACTGATCTACAGACCCA
ATGGCAATGCCCGGCCAGAGGCCACGGTTATTAGTGTCCACCATATATAT
CATGCGGGTGTTGCGCCGCCACCAACGCAACTACGAAAGATAGATTGTAC
CCCAGTCGCAGATACTGAATCTCTACCAGCCACATCCGCAGCATCATCAA
TCCGCATCAACAGCAGCAAATTTCCCAGCCAACGGCACTACATCAG
UFO07176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 733..1653 | 9..931 | 4055 | 96.1 | Plus |
| vri-RE | 3890 | CG14029-RE | 782..1702 | 9..931 | 4055 | 96.1 | Plus |
| vri-RD | 3455 | CG14029-RD | 733..1653 | 9..931 | 4055 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5308808 | 142..931 | 3355 | 95.6 | Plus |
| 2L | 23513712 | 2L | 5307780..5307912 | 9..141 | 650 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:01 has no hits.
UFO07176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:30 Download gff for
UFO07176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 654..1596 | 1..946 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:42 Download gff for
UFO07176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 668..1610 | 1..946 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:36 Download gff for
UFO07176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 726..1668 | 1..946 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:36 Download gff for
UFO07176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5307773..5307912 | 1..141 | 96 | -> | Plus |
| 2L | 5308021..5308823 | 142..946 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:42 Download gff for
UFO07176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5307773..5307912 | 1..141 | 96 | -> | Plus |
| arm_2L | 5308021..5308823 | 142..946 | 95 | | Plus |
