UFO07177.5prime Sequence
1082 bp (976 high quality bases) assembled on 2009-09-30
> UFO07177.5prime
CAGTCGACATGAGTATGAGCGACGACGACCGCGACATAGACATCGAAAGT
GACGAGGACGGGGACTCGGACACTGGCTTGGGATCCTCGCGACACACAAA
CACCGCCAATTTCACCCAGGCCGAAAAGCGGGCGCACCACAACGCTTTGG
AGCGAAGGCGGCGCGATCACATCAAGGAGAGCTTCACCAACCTGCGTGAG
GCGGTGCCCACACTCAAGGGCGAAAAGGCGAGTCGAGCTCAAATCCTGAA
AAAGACCACCGAATGCATACAGACGATGAGGCGGAAGATCAGTGAAAACC
AGAAAGACATCGAAGAGATCAAGAGGCAAAACAACATAATAGCTAAGCAG
ATACAAGCACTGGAGAGTTCAAATGGGGATCAGTTCAGCGAATTTCTCAG
CGACGAGGAAGTGGGCAGCGAGGAGGCCGACGACGAAGACCTCGACCAGG
ACTTCAGTAGACGCAATAAAAAGATGAAGACCTTCCACGCAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCCACCCAGGATGCTGAGA
CGAAAAACATATCTCAATAAACCCTTTAGAATAGCAGTTTCACGTACACG
CCAATCTGCATAATGTGTAGACTGCGAATCGTCTGGAATCATTCAGAGCG
ATGAACGTCAGTTGCCATGAACGGTTACAGGT
UFO07177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-RD | 1289 | CG9648-RD | 158..642 | 7..491 | 2425 | 100 | Plus |
| Max-RC | 822 | CG9648-RC | 158..642 | 7..491 | 2425 | 100 | Plus |
| Max-RA | 995 | CG9648-RA | 158..642 | 7..491 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19262879..19263018 | 491..352 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 19263084..19263209 | 351..226 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 19263416..19263526 | 228..118 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 19263839..19263905 | 120..54 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 19263980..19264027 | 54..7 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:21 has no hits.
UFO07177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:29 Download gff for
UFO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 160..649 | 1..491 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:54 Download gff for
UFO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 153..642 | 1..491 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:16 Download gff for
UFO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 153..642 | 1..491 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:16 Download gff for
UFO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19262879..19263018 | 352..491 | 100 | <- | Minus |
| 3L | 19263084..19263207 | 228..351 | 100 | <- | Minus |
| 3L | 19263417..19263524 | 120..227 | 100 | <- | Minus |
| 3L | 19263840..19263905 | 54..119 | 100 | <- | Minus |
| 3L | 19263981..19264031 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:54 Download gff for
UFO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19256517..19256624 | 120..227 | 100 | <- | Minus |
| arm_3L | 19256940..19257005 | 54..119 | 100 | <- | Minus |
| arm_3L | 19257081..19257131 | 1..53 | 94 | | Minus |
| arm_3L | 19255979..19256118 | 352..491 | 100 | <- | Minus |
| arm_3L | 19256184..19256307 | 228..351 | 100 | <- | Minus |
