UFO07178.5prime Sequence
1104 bp (1021 high quality bases) assembled on 2009-09-30
> UFO07178.5prime
CAGTCGACATGGATGCCACACAGCTAACGGAACTAATGGGCAGCCATGAT
TTTATGCAATTACAACATCAATTGCATCACAATAACAACAATTACAACAC
AGACGGACACAATGGACTGTCTTCAGAATCAGCGGAGGGAAGTTCTCGAC
CCGTCCGTCGTGCCACCAGACGAACTTCACAGCTAAGCAATAATACTTAT
GACCTGGAGATGACAGATTCCAGTTCGCAAAGCGATGACACAAGCGGCGG
AGGCGGCAGCAGCAACGGGGGTGGTAGCACCACAAACACTGGACATCCGT
CCGGCTGCTCTCTGGGCGGTCAGGGGCCATCAGGCCGCGGACGGGTCCAG
CAAGCTAGCTCAGGAGCCTGTCCATCTACCATTGCCCCGAACAGTACCAG
CTCCAACTCCTCCAATGCAAACGGCAACGCCAGTAGGCGGCGGAAAGGCG
CCCTGAACGCTAAGGAGCGGAATATGCGTCGCTTGGAGTCAAATGAACGA
GAGCGAATGCGGATGCACAGCCTAAACGATGCATTTCAATCGCTTCGAGA
GGTCATACCGCACGTGGAGATGGAGCGACGGCTGTCCAAGATTGAAACAC
TCACACTGGCCAAAAACTATATCATAAATCTGACGCACATAATACTCTCC
AAGCGCAACGAGGAGGCGGCGGCCTTGGAGCTGAACTCGGGGGCCGTTGG
TGGGGTGCTGCTCTCAAATCTTTCCTCCGAAAGTGGAGGACCGGTAGCGA
GTGGTATTCCTGCAAATTCCAATGCCGCGACGATATGCTTTGAGGATACC
CTGGCCAGCGGAGGTGCCTTTGACTGCGCCATTTTGGCAGCCACCGACGG
CAGCCTACTGAACGCTGCCACAGTGACAACCAGCCCCGCGATGCAGAGCA
TCCAATCACAGCCATACACTTGCAGACCCGATGGAGCAGCAGCAACAGCA
GGCCAGCATCTTCGCACATCAGCAGCGATGCATGACATGCATCTAGGGGC
AGCATCATCGCAGCAGCAGCTAGCTTGTACTAAATGCACCTACTTCGTGG
GACTGGATGATAGGTTGGTCGGACTGGGATGGGTGCACATGCCAGCTTGC
GAAT
UFO07178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dimm-RB | 3292 | CG8667-RB | 311..1374 | 8..1056 | 4850 | 98 | Plus |
| dimm-RA | 1411 | CG8667-RA | 43..1106 | 8..1056 | 4850 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21339346..21340125 | 180..957 | 3785 | 99.6 | Plus |
| 2L | 23513712 | 2L | 21339110..21339284 | 8..182 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:17 has no hits.
UFO07178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:28 Download gff for
UFO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 1..1063 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:52 Download gff for
UFO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 36..1106 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:14 Download gff for
UFO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 36..1106 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:14 Download gff for
UFO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21339103..21339284 | 1..182 | 97 | -> | Plus |
| 2L | 21339349..21340237 | 183..1056 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:52 Download gff for
UFO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21339103..21339284 | 1..182 | 97 | -> | Plus |
| arm_2L | 21339349..21340237 | 183..1056 | 97 | | Plus |
