UFO07180.5prime Sequence
1089 bp (1001 high quality bases) assembled on 2009-09-30
> UFO07180.5prime
CAGTCGACATGGAATACACCACCAAGACCCAGATCTACCAGAAGGTGAAG
AAGCCAATGCTGGAGCGCCAGCGACGTGCCCGCATGAACAAGTGCCTGGA
CAACCTGAAAACACTTGTCGCCGAGCTACGAGGTGATGATGGCATCCTGC
GCATGGACAAGGCCGAGATGCTCGAGTCAGCGGTGATCTTCATGCGCCAG
CAAAAGACACCAAAGAAGGTGGCTCAGGAAGAACAATCCCTCCCCCTGGA
CAGCTTTAAGAATGGCTACATGAATGCCGTCAACGAGGTGTCACGTGTCA
TGGCCTCCACACCTGGCATGAGCGTCGACCTGGGCAAATCGGTGATGACT
CACCTGGGACGCGTCTACAAGAACTTGCAGCAATTCCACGAAGCACAGTC
CGCCGCCGACTTCATCCAGAACTCGATGGACTGCTCCTCAATGGACAAGG
CTCCGCTCAGCCCCGCCTCCTCCGGATATCACAGCGACTGCGACAGCCCC
GCCCCCTCGCCACAGCCCATGCAGCAGCCCTTGTGGCGCCCCTGGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATATATTTGCCCATGGTGAAAACGGGGCGAAGAGTGTCCATA
TGCCACGTTTAAATCAAACTGTGAAACTCACCCAGGATGCTGAAACGAAA
ACATATCTCAATAACCCTTTAGGATAGCCAGGCTTCACGTACACGCCCAA
TCTGCAATTATGTGTAGAACCTGCGGATCGTCTGCATCA
UFO07180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 85..621 | 9..545 | 2685 | 100 | Plus |
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 121..451 | 22..358 | 455 | 76.6 | Plus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 173..232 | 42..101 | 180 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26040324..26040860 | 9..545 | 2685 | 100 | Plus |
| 3R | 32079331 | 3R | 26029285..26029615 | 358..22 | 385 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:35 has no hits.
UFO07180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:27 Download gff for
UFO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)-RA | 1..540 | 9..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:53 Download gff for
UFO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m8-HLH-RA | 85..624 | 9..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:11 Download gff for
UFO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m8-HLH-RA | 85..624 | 9..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:11 Download gff for
UFO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26040324..26040863 | 9..549 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:53 Download gff for
UFO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21866046..21866585 | 9..549 | 99 | == | Plus |
