UFO07183.5prime Sequence
1091 bp (982 high quality bases) assembled on 2009-09-30
> UFO07183.5prime
CAGTCGACATGTCGAAGTTGAGCGACACTAAGATCCCGATCACGGAGTTC
CTGGAGGCATACCGTCGCCAGCCGTGCCTCTACAACACACTGCTGGACTC
GTACAAGAATCGTGTGTCCCGGGAGGAGGCCTACGGAGCGATCATCCGGT
CCCTGAAGATACCCCAACTGACAGTGTCGGACATAAAGCTAAAGATCAAG
AGCGTGCGTACCGTGTACTCTAAGGAGCTGCGCATCTGGATGCGTGAGAA
GGAGCTGGGCAGGACCTACGAACCAAAGTTGTTTTGGTTTAGGTTGGCCG
ACTCCTTTCTACGCTCCGTTTCCCTCTCCCACTGCAAAAGGCAGGGAAAA
AATAACAGTTCCAGTGCTCAATTAACGACGATCAAATCGGATGAGACGAG
CAAGCTTCTTTGCACTGCCGCCGCAGATATCACTATGAGCGAGGATGCGC
TAGAGGAAGAGGATGCAGAGGTAAATGGCGAGCCGGAGGAGTGTCCTTTG
GAGGAAAGCAGGCCAACAGCAAGCATCTGCAAAGATGATTCCACGCTCTG
CCTGGCGGATCAACCACAGCAGGAGCACTATTCTCAGGGGTGCAGCAGCT
CCCAGCAGCTTCCTCACACGATGGCACAACGAAAATCAAAGTACATTACA
AGTCTGGACTCGGCCGGAGAGGATGATCTTATTATATTCGGCCAGAGCAT
CGCCTCTCAGCTGCGAACCATTCCGGATTCATATTCTCGGTCCGTGGCTA
AGCTGCGTATCCAGCAGGTGCTGTTCGAGGCTGAAACCGGGCAGTTTCAG
AGCACCGAGGTCAATAGCACGCAACTCCAGAATACCTTTGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATAATCAT
AATCATATCATAATCACACTAGCCTAGAGATCTGTCATGACTAGTGCTTG
ATCTCACCAATAAAAACGCCGCGCACGAGCGTCTGACATCAGATGAGTCT
GAGTCATACTGATCTATCACAGGATTCCAGCGAGCTCGATTCAATTACGC
CTCTGCACACTCGCATCGCGATCGTGATCATAGCATGCGCG
UFO07183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15601-RA | 1078 | CG15601-RA | 67..898 | 8..839 | 4160 | 100 | Plus |
| CG15601-RB | 1485 | CG15601-RB | 477..1305 | 8..839 | 4105 | 99.6 | Plus |
| CG15601-RC | 940 | CG15601-RC | 256..760 | 335..839 | 2495 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15711508..15712006 | 341..839 | 2495 | 100 | Plus |
| X | 23542271 | X | 15711123..15711456 | 8..341 | 1670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:48 has no hits.
UFO07183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:33 Download gff for
UFO07183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15601-RA | 1..834 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:36 Download gff for
UFO07183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15601-RA | 60..901 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:04 Download gff for
UFO07183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15601-RA | 60..901 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:04 Download gff for
UFO07183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15711116..15711456 | 1..341 | 98 | -> | Plus |
| X | 15711509..15712009 | 342..843 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:36 Download gff for
UFO07183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15605149..15605489 | 1..341 | 98 | -> | Plus |
| arm_X | 15605542..15606042 | 342..843 | 99 | == | Plus |
