UFO07202.5prime Sequence
1141 bp (1048 high quality bases) assembled on 2011-06-24
> UFO07202.5prime
CAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGATGGGCGAG
GTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAATGAGCGTGT
GGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCATCGTTATG
CGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCAAGGTGCAG
CTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCACTTCGTCAA
CCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGTCAAGGAGC
TATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACAAAGACCTG
GAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTGCAACTCTA
CAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTTCTGGGCTA
CGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCCAGGAGATC
GGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACAGACGGCTG
TAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTGCATTTTCA
AGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGCCTGCCAAA
ATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACACTACTTTCA
TCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGAGTGCGGCA
AGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAGCTGGTGAT
CCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAAGAGGGCTT
TGGCAGCGTAGCAGGGGACCGCAACGTCGTGAACAGCGGGAATATTGTGC
ACCAAAACATGATCAGCGATTCATCAGCATTCCATCATGGTGCTTAAGAC
CTGTGCTAACGTGACCTCAGCGCCGTCACTATGACAATGGTACCATAATG
CCAACGGGCCTGTTTCCCAATCCGCGTATACGAACGGATGATGGAAGGGC
AAGTCACGGCTACCGCGACGAAAAGTCCTCGAATCAGGTGACAAGACGAG
CGCGCAGAGACAAAAGCAACGACTGGATGGAAAAGATTCCT
UFO07202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tfb1-RD | 2018 | CG8151-RD | 140..1280 | 9..1139 | 5200 | 97.8 | Plus |
| Tfb1-RA | 2145 | CG8151-RA | 267..1407 | 9..1139 | 5200 | 97.8 | Plus |
| Tfb1-RC | 2022 | CG8151-RC | 144..1284 | 9..1139 | 5200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14363972..14364513 | 501..1037 | 2430 | 98.7 | Plus |
| 2R | 25286936 | 2R | 14363576..14363916 | 163..503 | 1690 | 99.7 | Plus |
| 2R | 25286936 | 2R | 14363360..14363513 | 9..162 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:30 has no hits.
UFO07202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:28 Download gff for
UFO07202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RA | 267..1410 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:10 Download gff for
UFO07202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RC | 144..1287 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:10 Download gff for
UFO07202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RC | 144..1287 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:10 Download gff for
UFO07202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14363360..14363513 | 9..162 | 100 | -> | Plus |
| 2R | 14363576..14363914 | 163..501 | 99 | -> | Plus |
| 2R | 14363973..14364623 | 502..1141 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:10 Download gff for
UFO07202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10250865..10251018 | 9..162 | 100 | -> | Plus |
| arm_2R | 10251081..10251419 | 163..501 | 99 | -> | Plus |
| arm_2R | 10251478..10252128 | 502..1141 | 96 | | Plus |
