UFO07205.5prime Sequence
1141 bp (1018 high quality bases) assembled on 2011-06-24
> UFO07205.5prime
CAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTCCCCTGCGG
AGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATCCACGATGG
CGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGAGTCCACGC
TGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGTCCCGCCAG
TCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAGATGGATGG
AGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGAGGTCTTCTGGGACCGC
CGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCCCCTGAACTTCTCCAAC
AAACTGAAGTTCGATGAGCTGGCCTTCAAGCGATCCCCTCTGAATGGCCT
GGACTACAGTACAAACAAGAATCTGGCCGATCTTGGGTACAATGGGCTGC
CCGTAGACTATGCGGCCTTTAATGGCGGGGTCAAGGCCAAAGTGTTTGGT
GCCGATATCAACAGACCCGCCGCCGATCCCTCCCTAAATGCAATTAGTCC
GCTCTCTAGCTTGACGCACCTTTCGGGTCTCACGGGCATATCACAATCCC
CGCTGGCGATCAGTTTCAACGAGCTGACCACAAACCTCAACTTGCTGGCC
CAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTCTAAACAGTTTCCCAGC
GGGCGCTGGTAACCTGAGGACCCCGAAGCCCAGTGGCCAAACGCCGCTGC
AGGTGCAGAGCCCCAGGAGCGATAGTGGAGATCGATCGGCGCAGGGATTG
TCGGTAAAGAACTGGGCCAAACAGAAGCCGGGGGGAGGGCCATGGCAGCC
TCATCTGAGCATCAAGAACGAGGGCAAGGGAGGCGATATCAAGAGTCCCA
GTCCTTCGATTGCTCCTTCGAAATGGGCGGGCCCATGACGCTCTCCAATC
TGGCCGAAGATCCCTGCTCTACTGCCTCAAGTCGCAGCAGACATGTTGGT
CTGATCCCTTTATCGGCCAACATCCCATGGGCGTGACAATTCTCCCTATC
GATCTTCCCGCCGCAACAAATGATCAGTGCACGAACCTCCGCCGATACCC
TCGGCTCGCTAACCCTCGTCCATCGGTCGCCATCTGAGAAG
UFO07205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 1099..2229 | 7..1122 | 5055 | 97.4 | Plus |
| dan-RB | 3340 | CG11849-RB | 471..1601 | 7..1122 | 5055 | 97.4 | Plus |
| dan-RA | 3340 | CG11849-RA | 471..1601 | 7..1122 | 5055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25189937..25190924 | 7..992 | 4715 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 7..200 | 445 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:35 has no hits.
UFO07205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:28 Download gff for
UFO07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 464..1599 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:13 Download gff for
UFO07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 466..1601 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:11 Download gff for
UFO07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 466..1601 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:11 Download gff for
UFO07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25189932..25191067 | 1..1122 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:13 Download gff for
UFO07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21015654..21016789 | 1..1122 | 97 | | Plus |
