UFO07207.5prime Sequence
1137 bp (1039 high quality bases) assembled on 2011-06-24
> UFO07207.5prime
CAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGG
GGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTGGAGATATC
GCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTATCTACTAT
CGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCCTTACAGCT
GGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAACGATCCTTC
ATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGCATCGACGG
TGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCGACAAGAAC
TGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTCATACAAGG
ACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCTAAAGTTGG
AGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGGAATCAATG
CATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCGTACAGTTG
CGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGACAACCCACG
CACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATTGCGGCAAG
AGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTTCACTCCAC
GGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTCAAGC
ACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGACCATTCGTC
TGCCAGGAGTGTGGACGCGCATTTCCGCTTAGCGACACCTGGTCACGCAC
AGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGAATGTGGTGA
GAGCTTTGCGCAGGAAAACCACCTGATTATGCACTCTCGCTTCCACGGGT
TCATTGAATCCATTTGTTTGCGCGATGCGAGCTTCGTTTCCACGCAAGTT
CAATTGGTTAACCACGACGTATCACGGCAAGGATTCCCCATTGGTGCACC
GTATGCGGCAAGGAGTTTCTACAAAGCGACGCTAGTTCCCAATGGAGGCG
GGTGCAACGGGCGGCAGGCCATCCTGGCTTCACTGTG
UFO07207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cg-RA | 2881 | CG8367-RA | 578..1704 | 9..1124 | 5180 | 98.2 | Plus |
| cg-RD | 3058 | CG8367-RD | 755..1881 | 9..1124 | 5180 | 98.2 | Plus |
| cg-RC | 2866 | CG8367-RC | 578..1689 | 24..1124 | 5105 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14178267..14178596 | 611..939 | 1600 | 99.7 | Plus |
| 2R | 25286936 | 2R | 14177861..14178021 | 352..512 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 14176405..14176542 | 134..271 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 14174447..14174572 | 9..134 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 14178098..14178203 | 513..618 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 14176610..14176693 | 270..353 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 14178672..14178804 | 948..1075 | 310 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:40 has no hits.
UFO07207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:29 Download gff for
UFO07207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RA | 593..1719 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:15 Download gff for
UFO07207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RD | 755..1881 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:13 Download gff for
UFO07207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RD | 755..1881 | 9..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:13 Download gff for
UFO07207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14178272..14178596 | 616..939 | 99 | -> | Plus |
| 2R | 14178665..14178830 | 940..1098 | 91 | == | Plus |
| 2R | 14174447..14174572 | 9..134 | 100 | -> | Plus |
| 2R | 14176406..14176542 | 135..271 | 100 | -> | Plus |
| 2R | 14176612..14176691 | 272..351 | 100 | -> | Plus |
| 2R | 14177861..14178021 | 352..512 | 100 | -> | Plus |
| 2R | 14178098..14178200 | 513..615 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:15 Download gff for
UFO07207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10063911..10064047 | 135..271 | 100 | -> | Plus |
| arm_2R | 10065777..10066101 | 616..939 | 99 | -> | Plus |
| arm_2R | 10064117..10064196 | 272..351 | 100 | -> | Plus |
| arm_2R | 10066170..10066335 | 940..1098 | 91 | == | Plus |
| arm_2R | 10061952..10062077 | 9..134 | 100 | -> | Plus |
| arm_2R | 10065366..10065526 | 352..512 | 100 | -> | Plus |
| arm_2R | 10065603..10065705 | 513..615 | 100 | -> | Plus |
