UFO07208.5prime Sequence
1153 bp (1068 high quality bases) assembled on 2011-06-24
> UFO07208.5prime
CAGTCGACATGGGTATCCTACCGAGTGGCAACATCTTCAGCGAGCTGGAG
CGGATCTGCACCACCGGCTACTACTCGTCGCAGCCGTCGATTGAGGATCA
ATGGCAACAGACCTGCTACGAACTGGAGCGCTATCTGCGGGATGAGCCCA
AGCTGCAGAAGAAGATGCACAGCAATCTGGACAATCCGTGGGACATATTC
TCCACACCCGCCCGCCTGCTCGAGGAGCTGAAGATCAAGGAGCAGCACCT
GGACACGATCTCGACGACCTCCTCGGTCTCGTCCAACTGCTCGGGCACCT
CCTGGGACAGCAATGGTTCCCAGGCACTGAGCTGCTCGGTGCTGGTCAAG
CAGGAGCGGATCGACGAGGAGGACGACGATGTGGGCTGTGACGACAAGCT
GAGCGTGCTGCTCGCAGCTCCGCCCTCGGCCATCTCTCCCAATCCCAGCA
TCGGCAGTGCGGGCAACATGACGCCCACCAGCATCAGCAACAGCAGCAGC
ATCAGCAGCAGCAATAGCCACAGCAATAGCAACGGCAACACCACCGGCAG
CAGCAACATCATCGCCAGCCCGCTGAGCAGTCTGGGCAGTGGCAGCACCA
TCACAGTGAGTTCCCGCAACAGTTCGGCGCCGGGCATCAAGGTGCGCGTC
GTCCAGGCCAAGAATCACCCGGGCAGCAATGCGAGAATGCACCTGGGGCA
TGTCCAGGACTTTGTGTTGCCCACGCTCACGCCGCCCTCTTCGCCAGAGT
CCAACCTGCGCAGCCACAATTACGCCCAGCAGCTGGAGGCCAACGATTTG
GCGGCACTGATACAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCTCAATCCACAGCCCGGCAACTCCACACCCGCTA
CAGCAATCCTGCGCTTCACCAGCCAGAGCAATCCCACAATGACGCAACTG
CAGCAGCAGCAGCAGCAGCTGGCCGTCCAGCATTTGAGCATATCGCCACA
GGCCCTTGGCCACAGCAACATCGGCAGCAATTCGCCCAAGAGCAGCAGCA
GCAGTGCAGCACCAGCAGCCAATAGGCAGCAGTAGCAGCCCAAGGTAGAG
GAGTCAGCACAGCGGGAGCAGAACAGCAAACACAAGGTAACATCCGCGAG
AAC
UFO07208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 8446 | CG33473-RC | 1392..2533 | 9..1148 | 5325 | 98.2 | Plus |
| luna-RD | 3037 | CG33473-RD | 821..1962 | 9..1148 | 5325 | 98.2 | Plus |
| luna-RB | 3608 | CG33473-RB | 1392..2533 | 9..1148 | 5325 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10990146..10991127 | 1090..108 | 4755 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11099532..11099633 | 110..9 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:45 has no hits.
UFO07208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:30 Download gff for
UFO07208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 364..1464 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:18 Download gff for
UFO07208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1385..2485 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:14 Download gff for
UFO07208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1385..2485 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:14 Download gff for
UFO07208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10990133..10991124 | 111..1103 | 99 | <- | Minus |
| 2R | 11099532..11099639 | 1..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:18 Download gff for
UFO07208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6877638..6878629 | 111..1103 | 99 | <- | Minus |
| arm_2R | 6987037..6987144 | 1..110 | 95 | | Minus |
