UFO07210.5prime Sequence
1159 bp (1046 high quality bases) assembled on 2011-06-24
> UFO07210.5prime
CAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACACCGGCAAG
TCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTGCTAAATGC
CGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATTGCTGAAGA
ATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACTCGAGGTG
ATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCGAAAAGCA
GGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTTCTCATCG
AGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGTGTGCATG
CAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACAAGGGTTG
GCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAATAGCGATA
CAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAAAAATCTC
GATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGCCCGATGA
AGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCCATTGTAA
ACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATTACCACGTG
GAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCAAAAGACT
GAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGTGGACGAGA
AACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAATCAACCAC
CTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCCCTCCATCA
GTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAAGGAATCTTTACGCTTA
TGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGCTGTACAAT
ATGTTCTATCCACGGATGTTCCACACAGGTACAAGGCACGCCTGTTTTAC
TTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGATCTGGTGGCG
GCATCGTAGCGTCTCGCTTCGCCTGGCCTCATCGCCGAACGGAAGATGCT
GTTTTAGATCGATTCGTTGCAATCTGCTATGGACTACTGGAATGCCAAGT
GATCCGCGC
UFO07210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RA | 1713 | CG2875-RA | 118..1249 | 9..1130 | 5295 | 98.5 | Plus |
| CG2875-RC | 1975 | CG2875-RC | 118..1246 | 9..1130 | 5240 | 98.2 | Plus |
| CG2875-RB | 1710 | CG2875-RB | 118..1246 | 9..1130 | 5240 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3572595..3573304 | 855..146 | 3550 | 100 | Minus |
| X | 23542271 | X | 3572332..3572533 | 1054..855 | 880 | 98 | Minus |
| X | 23542271 | X | 3573368..3573505 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:11 has no hits.
UFO07210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:25 Download gff for
UFO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 116..1265 | 9..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:59 Download gff for
UFO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 118..1267 | 9..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:01 Download gff for
UFO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 118..1267 | 9..1145 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:01 Download gff for
UFO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3572230..3572532 | 856..1145 | 93 | <- | Minus |
| X | 3572595..3573303 | 147..855 | 100 | <- | Minus |
| X | 3573368..3573505 | 9..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:59 Download gff for
UFO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3466263..3466565 | 856..1145 | 93 | <- | Minus |
| arm_X | 3466628..3467336 | 147..855 | 100 | <- | Minus |
| arm_X | 3467401..3467538 | 9..146 | 100 | | Minus |
