UFO07211.5prime Sequence
1143 bp (1019 high quality bases) assembled on 2011-06-24
> UFO07211.5prime
CAGTCGACATGGAGACGCCCGTCGAGGAGCACGGCATGGACCTGACCAAG
GTGTCCGTGGTGCGCTCCGCCAAGGGCGTGGATATGCTCTGCGTGGACGA
CTATCTGTACCACTTCGATCGCATCGGGCGGAATAACACCTACCGATGGC
TGTGCAACAGGCGCAAGGACAAGTCCACTCCCTGCAAGTCCCGCATCTGC
ACCATGCTGCCCGATCCGCTGGACAAGACGCGCCACGTCGTCGTGGACGT
CGTTCTGGCCCACATCCACCCGCGCTGCAGCGATCACGAGGTCAACAAGG
TGGCCCAGCGCAAGCGGCTCTCCGTAATGATGATGAACGACGCTTACAGC
ACCACCCAGCCGAAGAGAGCACGCCTGTACGAGCGCGCCAACGCCGGCAT
GAATCCGCCGGAGTTCATCTACGGAAGCATCGACACCTCCACCGTGGAGG
CCTCGTTCCAGTTGGACTTTGAGGACAAGGATCGTGTGTACATGCTACGG
CGCCGCGACGGCCGCGTGATGGTCTGCATCGACGGGCATCTGTACTACCT
GGCCGGGAAATCCTACAAGGGCGACATATTCCGATGGACCTGTGTGCGCA
AGCGTGACATTGAGTGCACGGCCAGGATCTGCACGGAGGCGACTTTGGCG
GGGGCACATCGCCTGCATGCCGTCGACACGGATGCGCACATTCATCCGCA
CTACTCGGCCGCCAAGCTGATGCACATGTTTTCGAAGCACCAAATCGTGT
TGGTGGAGGACGAAAATACCTCTGATGTGCTGGCAGAGTGCCCCAATCTT
GAGTACTTCGATCCGGAAAACACTTTCGACACAGCTCAGCGGGGCGATGA
CTTGGAATCCATAATAATCGAGGAGTGCGAGGATAACTACGATATATACA
TGAGAACGGACGGGAGCCAAAGTGGAGGGATTCACGGCAGCGAAGAGCTC
GAGAGCCAGGAAGGGGATGACGAGTCTCGCTGGTGGACCCGAAAATGCAT
CACAGCTCAGTGGCCAGCGGCATCGACGTAATGCCAACTATCTGCGCGCG
AGCCACAATCCACTCACGGGAAACGGACCTGACTAGGTTCACATTTCTAA
CATCGGCAGGTCGAGGCGCTGTGCCTGGAATTCGCCATCTGTT
UFO07211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 339..1444 | 9..1107 | 5200 | 98.5 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 339..1444 | 9..1107 | 5200 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7148992..7149634 | 1107..472 | 2710 | 96.9 | Minus |
| 3R | 32079331 | 3R | 7150165..7150630 | 474..9 | 2330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:16 has no hits.
UFO07211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:26 Download gff for
UFO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 310..1425 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:03 Download gff for
UFO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1454 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:04 Download gff for
UFO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1454 | 9..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:04 Download gff for
UFO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7148982..7149632 | 474..1114 | 96 | <- | Minus |
| 3R | 7150166..7150630 | 9..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:03 Download gff for
UFO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2974704..2975354 | 474..1114 | 96 | <- | Minus |
| arm_3R | 2975888..2976352 | 9..473 | 100 | | Minus |
