Clone UFO07212 Report

Search the DGRC for UFO07212

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:72
Well:12
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptmid-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07212.5prime Sequence

1132 bp (1020 high quality bases) assembled on 2011-06-24

> UFO07212.5prime
CAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACGGGGTGCCC
GCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACAACGGCTAG
CAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGCCATCATGG
CTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTGCAAGTCCC
ATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGCAGCGATGC
CGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCAGCACCACC
AGCATCACCAGCACCACCACAATAACAACAATAACAACAACAACAACAAT
GTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAAACAGCTTC
CGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGGACGCTGCT
CCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGCGTTTAACA
CCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGCAATTGCGA
CGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCTGTGGGATC
GCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGGGCAGACGC
ATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGGCAAATCCA
GCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCATGGACTCGA
AGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGGCCGGCAAG
GCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGACAGTCCCTT
CAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAAGTGAAGCT
GACTAATAACGAAATGGATAGAACGGACAGATCGTTTTGACTCGATGCAT
CGCTACCAGCCCAGAATTCATTTGTGCGTTTGAGCATGACAGAGCATTCG
TCGAATCCCAGATGCAGACTGATCACAAGACTACGTATCCCGAAACGTAT
TCACGCGGTTACGGCTATCCGATTCACTGATCACCAGGCTGAAATCGATC
GATCGTGGCTAGGCTCGATCCGTCGATTACGA

UFO07212.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 280..1392 9..1099 4985 97.7 Plus
mid-RB 2139 CG6634-RB 280..1392 9..1099 4985 97.7 Plus
H15-RB 2926 CG6604-RB 1031..1512 522..997 670 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5463819..5464269 196..646 2255 100 Plus
2L 23513712 2L 5465217..5465505 644..930 1345 99.3 Plus
2L 23513712 2L 5461918..5462106 9..197 945 100 Plus
2L 23513712 2L 5407693..5407817 522..646 280 81.6 Plus
2L 23513712 2L 5413009..5413284 644..918 280 74.3 Plus
X 23542271 X 8451685..8451770 661..576 205 82.6 Minus
2R 25286936 2R 23875716..23875774 291..349 205 89.8 Plus
2L 23513712 2L 5465891..5465950 928..985 200 96.7 Plus
Blast to na_te.dros performed 2014-11-26 23:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1613 283..372 145 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2546 283..337 133 73.2 Plus

UFO07212.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:26 Download gff for UFO07212.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RA 270..1286 1..1010 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:05 Download gff for UFO07212.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 272..1288 1..1010 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:06 Download gff for UFO07212.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 272..1288 1..1010 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:06 Download gff for UFO07212.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5461910..5462104 1..195 97 -> Plus
2L 5463819..5464269 196..646 100 -> Plus
2L 5465220..5465505 647..930 99 -> Plus
2L 5465894..5465978 931..1010 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:05 Download gff for UFO07212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5461910..5462104 1..195 97 -> Plus
arm_2L 5463819..5464269 196..646 100 -> Plus
arm_2L 5465220..5465505 647..930 99 -> Plus
arm_2L 5465894..5465978 931..1010 94   Plus