UFO07212.5prime Sequence
1132 bp (1020 high quality bases) assembled on 2011-06-24
> UFO07212.5prime
CAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACGGGGTGCCC
GCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACAACGGCTAG
CAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGCCATCATGG
CTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTGCAAGTCCC
ATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGCAGCGATGC
CGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCAGCACCACC
AGCATCACCAGCACCACCACAATAACAACAATAACAACAACAACAACAAT
GTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAAACAGCTTC
CGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGGACGCTGCT
CCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGCGTTTAACA
CCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGCAATTGCGA
CGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCTGTGGGATC
GCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGGGCAGACGC
ATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGGCAAATCCA
GCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCATGGACTCGA
AGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGGCCGGCAAG
GCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGACAGTCCCTT
CAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAAGTGAAGCT
GACTAATAACGAAATGGATAGAACGGACAGATCGTTTTGACTCGATGCAT
CGCTACCAGCCCAGAATTCATTTGTGCGTTTGAGCATGACAGAGCATTCG
TCGAATCCCAGATGCAGACTGATCACAAGACTACGTATCCCGAAACGTAT
TCACGCGGTTACGGCTATCCGATTCACTGATCACCAGGCTGAAATCGATC
GATCGTGGCTAGGCTCGATCCGTCGATTACGA
UFO07212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 280..1392 | 9..1099 | 4985 | 97.7 | Plus |
mid-RB | 2139 | CG6634-RB | 280..1392 | 9..1099 | 4985 | 97.7 | Plus |
H15-RB | 2926 | CG6604-RB | 1031..1512 | 522..997 | 670 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5463819..5464269 | 196..646 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 5465217..5465505 | 644..930 | 1345 | 99.3 | Plus |
2L | 23513712 | 2L | 5461918..5462106 | 9..197 | 945 | 100 | Plus |
2L | 23513712 | 2L | 5407693..5407817 | 522..646 | 280 | 81.6 | Plus |
2L | 23513712 | 2L | 5413009..5413284 | 644..918 | 280 | 74.3 | Plus |
X | 23542271 | X | 8451685..8451770 | 661..576 | 205 | 82.6 | Minus |
2R | 25286936 | 2R | 23875716..23875774 | 291..349 | 205 | 89.8 | Plus |
2L | 23513712 | 2L | 5465891..5465950 | 928..985 | 200 | 96.7 | Plus |
Blast to na_te.dros performed 2014-11-26 23:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1613 | 283..372 | 145 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 283..337 | 133 | 73.2 | Plus |
UFO07212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:26 Download gff for
UFO07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RA | 270..1286 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:05 Download gff for
UFO07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 272..1288 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:06 Download gff for
UFO07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 272..1288 | 1..1010 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:06 Download gff for
UFO07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5461910..5462104 | 1..195 | 97 | -> | Plus |
2L | 5463819..5464269 | 196..646 | 100 | -> | Plus |
2L | 5465220..5465505 | 647..930 | 99 | -> | Plus |
2L | 5465894..5465978 | 931..1010 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:05 Download gff for
UFO07212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5461910..5462104 | 1..195 | 97 | -> | Plus |
arm_2L | 5463819..5464269 | 196..646 | 100 | -> | Plus |
arm_2L | 5465220..5465505 | 647..930 | 99 | -> | Plus |
arm_2L | 5465894..5465978 | 931..1010 | 94 | | Plus |