UFO07213.5prime Sequence
1127 bp (1014 high quality bases) assembled on 2011-06-24
> UFO07213.5prime
CAGTCGACATGAGCCACAAACGCTGCCTTGCGAACGAGGTAATCGAATTC
GTCCTGCCGGCCAATAGCGATTACTCGGACGAAGACAACCGTGGAAACGT
TCGTGTGATTAACACTAGCGATGATGCCACCTACGTGCTTCTGGACAACC
TGGGCAACGAGTTCGAAGAGGACATCATCATCGTCAATGAGAACGGCGTG
GAGAAGGAGATGCTGATGAGCAAGGAGCTGCGCGACTTTATAGTGGGCTC
CCGGGTGAAGGATTTGACGGATGACGAACAGATGCCGCAATTTGTGGTCA
GGGAATTGGATATGAGCGAAGTGGGGGATTTGGTGGAGGTGGAACCGGAG
ATGGAACAGGAGGCGGACTATGGCGACTACGGCGACTACGAGCACGAACC
TAGCTACGGCCATCCGCGCGATAACGAAAGGGTGGAAGAGGATCTGGATA
TGTATCCACCGTCGTCACCCTCGCTGCCACCATCGCCACCAAGGCCGCCG
TCGCCTGTTGTCCAGCCCGCTAGCAAAGCTAGAAATTCTGCCCGCCAGAT
CGCCTTACGTAGCTTTGTCAGCCAAAAAAACAACGACGACGATGATGGTA
GCGTGAAGGAGGTGAAGCCAAGCGAAAAGATGCTGGAGGAGTTCAAGGGA
CCGCGTCGCTACATGCTTTTCGACGACCTGATAGCCACCATTGTGGACTT
TGACGAGGATAGCACACCCCTTGTGGAGTTCTCCATGATCAGCGACATCA
TGGACGAGAAGCTGCCGGTGGAGTGCGGCATTTGCCCAGATGTGATGCAC
AAATCAAAGCTGTCCAAGCACCACAAGACCCATCTGGTGCCTGGCACCAA
TCGCTATGCTTGCATTTACTGCACGGAAACGTATCGCGACTGCAAGTACC
TGGCCGGACATGCGCGGCGCACATGGGCATCCGTCCATACGTCTGCGAAC
TGTGCACCCTATACTTTTCGACCAAGCAGGATCTGCCGCGTGCACATCAG
GCGGACATCTGGAGAAGAAGCATATTTGCGAGTGTGCGCAGACGTTCGCC
AGAATACCCAGCTGAGCGGCATCGCGAGGCGACGCACGAAAAGAAGCGGC
GATCAGTGCCGTACTGCCAGAGGGCCT
UFO07213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1972 | CG2116-RA | 108..1236 | 9..1127 | 5285 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8129919..8131020 | 9..1103 | 5040 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-26 23:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 659..757 | 450..547 | 132 | 60.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 982..1040 | 459..520 | 113 | 71.4 | Plus |
UFO07213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:32 Download gff for
UFO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 176..1308 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:27 Download gff for
UFO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 104..1236 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:20 Download gff for
UFO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 104..1236 | 1..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:20 Download gff for
UFO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8129915..8131047 | 1..1127 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:27 Download gff for
UFO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8023948..8025080 | 1..1127 | 98 | | Plus |
