UFO07214.5prime Sequence
1124 bp (1031 high quality bases) assembled on 2011-06-24
> UFO07214.5prime
CAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGGTGTGCCGC
ACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTGTTCCGAGT
GCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTCCGTGGAGC
AGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCTCCAAGCTG
AACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTTCAAAAGTT
CCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAACTTCGATG
TTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGGAAGAGGAC
AACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATCATTGAGAA
CGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGAGGTCGAAG
AGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTCAGGATGAC
TCCTTCGAGAGCGGCAACGACAACGACCTCGACGCAGACTTCCAAATCAG
TAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGGAGCCACTC
GTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGCGACAGGAG
GAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGACTCCGATGG
CAATCCGAAGGACAAGCCCAAACGCAAGAGGATTCCTGCTACGGAGCGGG
ATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGTTCAAGAAC
GCGATTCGCTACGAGGAGCACATGAAGCATCACAACGACTTGCTACCCTT
CCAGTGCACCGTCGAGAGTTGCCGAAAAGGCTTTACCACCGCCAATGGAC
TGCGCGTCCATGTGGAGCACGCCCACACGGAGACATCGGCTATGCATCCG
TGCACCTACGAGGCTGCACAGTCCTTTGCCCGGCCCGTGCTGCTCAGCTT
CACATGAAACGCGTGCACAAGTGACACCCCGCAAGGGACTCCCTGCACGG
ATTGCGGAGTCTTCGCTGGCCCACTGCCCTTCAGAAGCCATGTACAGCCA
CTGGCCGAGGACTGCTTGCATGTA
UFO07214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2685 | CG10270-RA | 120..1221 | 9..1096 | 5105 | 98.3 | Plus |
| D19A-RA | 3233 | CG10269-RA | 253..600 | 117..464 | 690 | 80.2 | Plus |
| D19A-RA | 3233 | CG10269-RA | 967..1143 | 756..932 | 420 | 82.5 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 824..1034 | 722..932 | 380 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6183930..6184801 | 880..9 | 4345 | 99.9 | Minus |
| 3L | 28110227 | 3L | 6188524..6188871 | 464..117 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6183725..6183872 | 1021..878 | 560 | 96.6 | Minus |
| 3L | 28110227 | 3L | 6180870..6181006 | 858..722 | 355 | 83.9 | Minus |
| 3L | 28110227 | 3L | 6188055..6188157 | 858..756 | 335 | 88.3 | Minus |
| 3L | 28110227 | 3L | 6181482..6181653 | 273..102 | 260 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6181274..6181379 | 463..358 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:13 has no hits.
UFO07214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:33 Download gff for
UFO07214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 238..1296 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:30 Download gff for
UFO07214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..1178 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:22 Download gff for
UFO07214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..1178 | 9..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:22 Download gff for
UFO07214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6183683..6183870 | 880..1059 | 94 | <- | Minus |
| 3L | 6183931..6184801 | 9..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:30 Download gff for
UFO07214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6176783..6176970 | 880..1059 | 94 | <- | Minus |
| arm_3L | 6177031..6177901 | 9..879 | 99 | | Minus |
